Detailed information NTG0345846

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GFD20_RS02050
• Genome accession: NZ_CP045768
• Coordinates: 440395..441399 (+)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CFSAN084950
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 435395..446399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFD20_RS02020 (GFD20_02020)	fghA	435487..436338 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
GFD20_RS02025 (GFD20_02025)	ispF	436409..436882 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GFD20_RS02030 (GFD20_02030)	truD	436879..437946 (+)	1068	WP_153655399.1	tRNA pseudouridine(13) synthase TruD	-
GFD20_RS02035 (GFD20_02035)	surE	437934..438683 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GFD20_RS02040 (GFD20_02040)	-	438716..439351 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GFD20_RS02045 (GFD20_02045)	-	439397..440290 (+)	894	WP_073663435.1	peptidoglycan DD-metalloendopeptidase family protein	-
GFD20_RS02050 (GFD20_02050)	rpoS	440395..441399 (+)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
GFD20_RS02055 (GFD20_02055)	fdxA	441826..442149 (-)	324	WP_003092272.1	ferredoxin FdxA	-
GFD20_RS02060 (GFD20_02060)	mutS	442216..444783 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
GFD20_RS02065 (GFD20_02065)	-	444909..445916 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=345846 GFD20_RS02050 WP_003143264.1 440395..441399(+) (rpoS) [Pseudomonas aeruginosa strain CFSAN084950]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=345846 GFD20_RS02050 WP_003143264.1 440395..441399(+) (rpoS) [Pseudomonas aeruginosa strain CFSAN084950]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611