Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW61_RS20035 Genome accession   NZ_CP036004
Coordinates   3855766..3856089 (+) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain BPN37/2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850766..3861089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW61_RS20020 (EXW61_20390) - 3851297..3852664 (-) 1368 WP_215598942.1 aldehyde dehydrogenase -
  EXW61_RS20025 (EXW61_20395) inhA1 3852822..3855209 (-) 2388 WP_098167303.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW61_RS20030 (EXW61_20400) - 3855552..3855686 (+) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW61_RS20035 (EXW61_20405) sinR 3855766..3856089 (+) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  EXW61_RS20040 (EXW61_20410) calY 3856172..3856765 (-) 594 WP_098167302.1 biofilm matrix protein CalY -
  EXW61_RS20045 (EXW61_20415) - 3857209..3858078 (-) 870 WP_078184140.1 DUF4047 domain-containing protein -
  EXW61_RS20050 (EXW61_20420) - 3858243..3858830 (-) 588 WP_063217402.1 CalY family protein -
  EXW61_RS20055 (EXW61_20425) sipW 3858893..3859462 (-) 570 WP_002064334.1 signal peptidase I SipW -
  EXW61_RS20060 (EXW61_20430) - 3859660..3860946 (-) 1287 WP_215598943.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=345778 EXW61_RS20035 WP_002011473.1 3855766..3856089(+) (sinR) [Bacillus mycoides strain BPN37/2]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=345778 EXW61_RS20035 WP_002011473.1 3855766..3856089(+) (sinR) [Bacillus mycoides strain BPN37/2]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment