Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW61_RS16705 Genome accession   NZ_CP036004
Coordinates   3186256..3186543 (-) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN37/2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181256..3191543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW61_RS16675 (EXW61_17000) - 3181511..3181858 (+) 348 WP_000426320.1 DUF4257 domain-containing protein -
  EXW61_RS16680 (EXW61_17005) - 3181943..3182167 (+) 225 WP_002012407.1 hypothetical protein -
  EXW61_RS16685 (EXW61_17015) - 3182352..3183527 (-) 1176 WP_002186090.1 MFS transporter -
  EXW61_RS16690 (EXW61_17020) - 3183577..3184512 (-) 936 Protein_3348 aldo/keto reductase -
  EXW61_RS16695 (EXW61_17025) - 3184620..3184928 (+) 309 WP_016102179.1 helix-turn-helix transcriptional regulator -
  EXW61_RS16700 (EXW61_17030) - 3184969..3185919 (-) 951 WP_215598831.1 serine protease -
  EXW61_RS16705 (EXW61_17035) abrB 3186256..3186543 (-) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW61_RS16710 (EXW61_17040) - 3186663..3188543 (-) 1881 WP_002012400.1 FtsX-like permease family protein -
  EXW61_RS16715 (EXW61_17045) nadE 3188814..3189632 (+) 819 WP_002064947.1 ammonia-dependent NAD(+) synthetase -
  EXW61_RS16720 (EXW61_17050) - 3189677..3190138 (-) 462 WP_078178508.1 NUDIX hydrolase -
  EXW61_RS16725 (EXW61_17055) - 3190166..3190366 (-) 201 WP_002064945.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=345775 EXW61_RS16705 WP_000648281.1 3186256..3186543(-) (abrB) [Bacillus mycoides strain BPN37/2]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=345775 EXW61_RS16705 WP_000648281.1 3186256..3186543(-) (abrB) [Bacillus mycoides strain BPN37/2]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547

Multiple sequence alignment