Detailed information NTG0345741

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GHR20_RS23975
• Genome accession: NZ_CP045740
• Coordinates: 5448094..5449380 (+)
• Length: 428 a.a.
• NCBI ID: WP_111586175.1
• Uniprot ID: -
• Organism: Streptomyces sp. SUK 48
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5443094..5454380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpX	5448094..5449380 (+)	1287	-	-	Regulator

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46658.50 Da
• Isoelectric Point: 4.7331

>NTDB_id=345741 GHR20_RS23975 WP_111586175.1 5448094..5449380(+) (clpX) [Streptomyces sp. SUK 48]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGASGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATILSKRELESKDVFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQGVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARGRGSGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=345741 GHR20_RS23975 WP_111586175.1 5448094..5449380(+) (clpX) [Streptomyces sp. SUK 48]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTGGCCGAGACCA
GCGAGGTGCGCTGGGAAGAGCTGCCCAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGCTACGTGGTCGGCCAGGAGGCC
GCCAAGAAGGCTCTGTCCGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCGGGCGAGAACGGCGGCGCGAGCGGCCG
TGACGACGCCATCGAGCTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCCCAGA
CCCTGGCCCGCATGCTGAACGTGCCGTTCGCGATCGCCGACGCGACCGCGCTGACGGAGGCGGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTCCTCAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACGGGCATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACCCGGGACGTCAGCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACGGCCTCGGTGCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCCTTCGCCGGTCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCTGTCCAAGCGCGAGCTGGAGTCCAAGGACGTCTTCGAGGACGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTGCCGGTGATCACCTCGGTGCACAACCTGGACCGC
GAGGCCCTGCTGAAGATCCTGGTCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAAGTCCTCCAGGGCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACC
GCCGACGTGGTCCTCTCCAACGTCAACCCGACCCTGATCCCCCGCGACGCCCGTGGCCGGGGCTCGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.184	93.925	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526