Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW27_RS16475 Genome accession   NZ_CP035999
Coordinates   3251010..3252359 (+) Length   449 a.a.
NCBI ID   WP_147739994.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN37/1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3246010..3257359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW27_RS16455 (EXW27_16765) - 3247100..3247735 (-) 636 WP_002034752.1 YigZ family protein -
  EXW27_RS16460 (EXW27_16770) - 3247974..3248816 (+) 843 WP_098167536.1 DegV family protein -
  EXW27_RS16465 (EXW27_16775) - 3248979..3249293 (+) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW27_RS16470 (EXW27_16780) - 3249499..3250879 (+) 1381 Protein_3214 NlpC/P60 family protein -
  EXW27_RS16475 (EXW27_16785) comFA 3251010..3252359 (+) 1350 WP_147739994.1 ATP-dependent helicase ComFA Machinery gene
  EXW27_RS16480 (EXW27_16790) - 3252359..3253063 (+) 705 WP_147739993.1 ComF family protein -
  EXW27_RS16485 (EXW27_16795) cspC 3253190..3253387 (+) 198 WP_001990088.1 cold shock protein CspC -
  EXW27_RS16490 (EXW27_16800) hpf 3253708..3254250 (+) 543 WP_002034758.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW27_RS16495 (EXW27_16805) - 3254539..3255033 (+) 495 WP_147739992.1 hypothetical protein -
  EXW27_RS16500 (EXW27_16810) - 3255152..3255736 (+) 585 WP_002068272.1 hypothetical protein -
  EXW27_RS16505 (EXW27_16815) - 3255768..3256556 (+) 789 WP_147739991.1 hypothetical protein -
  EXW27_RS16510 (EXW27_16820) - 3256543..3257238 (+) 696 WP_002129924.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50941.31 Da        Isoelectric Point: 9.3529

>NTDB_id=345734 EXW27_RS16475 WP_147739994.1 3251010..3252359(+) (comFA) [Bacillus mycoides strain BPN37/1]
MLAGRQLLLEELSSDLQDKLDHLKKHREVVCMQGVIKKFSKYTCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGILSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRNGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=345734 EXW27_RS16475 WP_147739994.1 3251010..3252359(+) (comFA) [Bacillus mycoides strain BPN37/1]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAAGCACCG
AGAAGTCGTTTGTATGCAAGGTGTAATTAAGAAGTTTTCAAAATATACGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCATTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGTCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAATGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AGCGAGGAGTAACTGTTAAAAATTTACAAGTTGCAGTTCTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.452

98.441

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment