Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW27_RS07125 Genome accession   NZ_CP035999
Coordinates   1427041..1427643 (+) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus mycoides strain BPN37/1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422041..1432643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW27_RS07090 (EXW27_07250) - 1422451..1423005 (-) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW27_RS07095 (EXW27_07255) - 1423062..1423511 (-) 450 WP_061688856.1 CotD family spore coat protein -
  EXW27_RS07100 (EXW27_07260) - 1423668..1424306 (-) 639 WP_078177995.1 YppG family protein -
  EXW27_RS07105 (EXW27_07265) - 1424484..1424675 (+) 192 WP_002030817.1 YppF family protein -
  EXW27_RS07110 (EXW27_07270) - 1424701..1425045 (-) 345 WP_002011864.1 YppE family protein -
  EXW27_RS07115 (EXW27_07275) - 1425061..1425303 (-) 243 WP_002011865.1 hypothetical protein -
  EXW27_RS31610 - 1425422..1425568 (+) 147 WP_307838604.1 phage portal protein -
  EXW27_RS07120 (EXW27_07280) - 1425912..1426937 (-) 1026 WP_002126479.1 DUF2515 domain-containing protein -
  EXW27_RS07125 (EXW27_07285) recU 1427041..1427643 (+) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  EXW27_RS07130 (EXW27_07290) - 1427710..1430433 (+) 2724 WP_078177994.1 PBP1A family penicillin-binding protein -
  EXW27_RS07135 (EXW27_07295) - 1430457..1430975 (-) 519 WP_033730526.1 YpoC family protein -
  EXW27_RS07140 (EXW27_07300) nth 1430979..1431626 (-) 648 WP_000933020.1 endonuclease III -
  EXW27_RS07145 (EXW27_07305) dnaD 1431642..1432349 (-) 708 WP_000728546.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=345707 EXW27_RS07125 WP_000155584.1 1427041..1427643(+) (recU) [Bacillus mycoides strain BPN37/1]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345707 EXW27_RS07125 WP_000155584.1 1427041..1427643(+) (recU) [Bacillus mycoides strain BPN37/1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AACACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment