Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW63_RS20540 Genome accession   NZ_CP035997
Coordinates   4019317..4020111 (+) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain BPN36/3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4014317..4025111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW63_RS20525 (EXW63_20965) argR 4015159..4015608 (+) 450 WP_002015076.1 arginine repressor ArgR -
  EXW63_RS20530 (EXW63_20970) recN 4015879..4017618 (+) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  EXW63_RS20535 (EXW63_20975) spoIVB 4017738..4019030 (+) 1293 WP_215551712.1 SpoIVB peptidase -
  EXW63_RS20540 (EXW63_20985) spo0A 4019317..4020111 (+) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  EXW63_RS20545 (EXW63_20990) - 4020409..4020972 (+) 564 WP_215551713.1 PRK06770 family protein -
  EXW63_RS20550 (EXW63_20995) - 4021213..4021359 (-) 147 WP_001247671.1 YycC family protein -
  EXW63_RS20555 (EXW63_21000) - 4021410..4022138 (+) 729 WP_215551714.1 glycerophosphodiester phosphodiesterase -
  EXW63_RS20560 (EXW63_21005) - 4022190..4022423 (-) 234 WP_001190193.1 DUF2627 domain-containing protein -
  EXW63_RS20565 (EXW63_21010) - 4022561..4024633 (+) 2073 WP_060749631.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=345696 EXW63_RS20540 WP_002015081.1 4019317..4020111(+) (spo0A) [Bacillus mycoides strain BPN36/3]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=345696 EXW63_RS20540 WP_002015081.1 4019317..4020111(+) (spo0A) [Bacillus mycoides strain BPN36/3]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAGCCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment