Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW63_RS06270 Genome accession   NZ_CP035997
Coordinates   1246725..1247327 (+) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain BPN36/3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241725..1252327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW63_RS06235 (EXW63_06390) - 1242112..1242666 (-) 555 WP_215552649.1 DUF1273 domain-containing protein -
  EXW63_RS06240 (EXW63_06395) - 1242723..1243172 (-) 450 WP_215552650.1 CotD family spore coat protein -
  EXW63_RS06245 (EXW63_06400) - 1243329..1243991 (-) 663 WP_215552651.1 YppG family protein -
  EXW63_RS06250 (EXW63_06405) - 1244168..1244359 (+) 192 WP_012260642.1 YppF family protein -
  EXW63_RS06255 (EXW63_06410) - 1244385..1244729 (-) 345 WP_002011864.1 YppE family protein -
  EXW63_RS06260 (EXW63_06415) - 1244745..1244987 (-) 243 WP_002011865.1 hypothetical protein -
  EXW63_RS29205 - 1245106..1245252 (+) 147 WP_306302660.1 phage portal protein -
  EXW63_RS06265 (EXW63_06420) - 1245596..1246621 (-) 1026 WP_215552652.1 DUF2515 domain-containing protein -
  EXW63_RS06270 (EXW63_06425) recU 1246725..1247327 (+) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW63_RS06275 (EXW63_06430) - 1247394..1250114 (+) 2721 WP_215552653.1 penicillin-binding protein 1A -
  EXW63_RS06280 (EXW63_06435) - 1250140..1250658 (-) 519 WP_215552654.1 YpoC family protein -
  EXW63_RS06285 (EXW63_06440) nth 1250662..1251309 (-) 648 WP_215552655.1 endonuclease III -
  EXW63_RS06290 (EXW63_06445) dnaD 1251325..1252032 (-) 708 WP_000728546.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=345656 EXW63_RS06270 WP_002030800.1 1246725..1247327(+) (recU) [Bacillus mycoides strain BPN36/3]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345656 EXW63_RS06270 WP_002030800.1 1246725..1247327(+) (recU) [Bacillus mycoides strain BPN36/3]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment