Detailed information NTG0345607

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PaeAG1_RS08135
• Genome accession: NZ_CP045739
• Coordinates: 1700699..1701703 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AG1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1695699..1706703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PaeAG1_RS08105 (PaeAG1_01585)	fghA	1695791..1696642 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PaeAG1_RS08110 (PaeAG1_01586)	ispF	1696713..1697186 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PaeAG1_RS08115 (PaeAG1_01587)	truD	1697183..1698250 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PaeAG1_RS08120 (PaeAG1_01588)	surE	1698238..1698987 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PaeAG1_RS08125 (PaeAG1_01589)	-	1699020..1699655 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PaeAG1_RS08130 (PaeAG1_01590)	-	1699701..1700594 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PaeAG1_RS08135 (PaeAG1_01591)	rpoS	1700699..1701703 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PaeAG1_RS08140 (PaeAG1_01592)	fdxA	1702130..1702453 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PaeAG1_RS08145 (PaeAG1_01593)	mutS	1702520..1705087 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PaeAG1_RS08150 (PaeAG1_01594)	-	1705213..1706220 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=345607 PaeAG1_RS08135 WP_003113871.1 1700699..1701703(+) (rpoS) [Pseudomonas aeruginosa strain AG1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=345607 PaeAG1_RS08135 WP_003113871.1 1700699..1701703(+) (rpoS) [Pseudomonas aeruginosa strain AG1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653