Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW60_RS28350 Genome accession   NZ_CP035987
Coordinates   5583098..5583376 (-) Length   92 a.a.
NCBI ID   WP_002069660.1    Uniprot ID   J9BTV5
Organism   Bacillus mycoides strain BPN29/1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5578098..5588376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS28330 (EXW60_29010) tnpA 5580156..5580554 (+) 399 WP_215588188.1 IS200/IS605 family transposase -
  EXW60_RS28335 (EXW60_29015) - 5580566..5581678 (+) 1113 WP_061674970.1 RNA-guided endonuclease TnpB family protein -
  EXW60_RS28340 (EXW60_29020) hfq 5582298..5582486 (-) 189 WP_002203963.1 RNA chaperone Hfq -
  EXW60_RS28345 (EXW60_29025) - 5582526..5582849 (-) 324 WP_002069661.1 hypothetical protein -
  EXW60_RS28350 (EXW60_29030) abrB 5583098..5583376 (-) 279 WP_002069660.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW60_RS28355 (EXW60_29035) - 5583709..5585130 (-) 1422 WP_061674972.1 rhodanese-like domain-containing protein -
  EXW60_RS28360 (EXW60_29040) - 5585198..5586397 (-) 1200 WP_215588189.1 FAD/NAD(P)-binding oxidoreductase -
  EXW60_RS28365 (EXW60_29045) - 5587122..5587559 (+) 438 WP_235702258.1 transposase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10193.89 Da        Isoelectric Point: 5.1988

>NTDB_id=345600 EXW60_RS28350 WP_002069660.1 5583098..5583376(-) (abrB) [Bacillus mycoides strain BPN29/1]
MKATGVTRKIDELGRVVIPKELRNTLGMKEKSPLEIFVEGEDIILQRYQPGGVCALTEEVSNRNISLANGKIALSPEGAE
LLIKEIEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=345600 EXW60_RS28350 WP_002069660.1 5583098..5583376(-) (abrB) [Bacillus mycoides strain BPN29/1]
ATGAAAGCAACCGGAGTAACTAGAAAAATAGATGAATTAGGGCGTGTGGTAATTCCAAAGGAACTTAGAAATACGCTAGG
TATGAAAGAAAAATCACCATTAGAGATCTTTGTAGAAGGTGAAGACATTATTTTACAGAGGTATCAGCCTGGTGGTGTTT
GTGCGTTAACAGAAGAAGTGTCAAATCGTAACATATCATTAGCAAATGGTAAGATAGCATTAAGTCCAGAAGGTGCAGAA
TTATTAATAAAAGAAATAGAACAATACCTTGTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J9BTV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.889

97.826

0.576

Multiple sequence alignment