Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EXW60_RS22170 Genome accession   NZ_CP035987
Coordinates   4321864..4323720 (+) Length   618 a.a.
NCBI ID   WP_215587783.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN29/1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4316864..4328720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS22155 (EXW60_22575) - 4317927..4318436 (+) 510 WP_215587780.1 GNAT family N-acetyltransferase -
  EXW60_RS22160 (EXW60_22585) - 4319563..4319973 (+) 411 WP_215587781.1 MarR family winged helix-turn-helix transcriptional regulator -
  EXW60_RS22165 (EXW60_22590) rcrP 4320108..4321877 (+) 1770 WP_215587782.1 ABC transporter ATP-binding protein Regulator
  EXW60_RS22170 (EXW60_22595) rcrQ 4321864..4323720 (+) 1857 WP_215587783.1 ABC transporter ATP-binding protein Regulator
  EXW60_RS22175 (EXW60_22600) - 4324364..4326319 (+) 1956 WP_215587784.1 ATP-binding cassette domain-containing protein -
  EXW60_RS22180 (EXW60_22605) - 4326501..4327124 (+) 624 WP_215587785.1 TetR/AcrR family transcriptional regulator -
  EXW60_RS22185 (EXW60_22610) - 4327160..4327771 (+) 612 WP_215587930.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68638.48 Da        Isoelectric Point: 6.8315

>NTDB_id=345592 EXW60_RS22170 WP_215587783.1 4321864..4323720(+) (rcrQ) [Bacillus mycoides strain BPN29/1]
MAKNDYTIGDHEKNSKNERQMGGGHSPMGGRAQGQKVNNFKKTIQQLISYCKSYVPIVIFALILAFVGSAFNVYGPEKLS
EMTDIIQEGIRGDIDLGAIKNIGIILVVLYGLGLVFNYIQGFIMATVTQKITKKMRTELSQKMNRIPLSYFDKTSYGNIL
SRVTNDVDTIGQTLNNSLGQLVTAIATFVGALIMMFYTNWIMAITGIVATLIGFILMTLIMKRSQKYFVQQQAELGKING
HIEEMYAGHHIVKAYNGEKEAKELFHTINDRLFDNAWKSQFMSGIMMPIMQFIGNFGYVAVCIVGALLVTNGVITIGTIV
AFMVYIRLFTQPLSQLAQAATNLQSTAAASERVFEFLAEEELSDESEKTMRLDNVKGDVEFNNVKFGYDKDRLIIKDFSA
KVNAGQKVAIVGPTGAGKTTLVNLLMRFYELNSGEITIDGVPINQLTREYVHDLFCMVLQDTWLFEGTIRDNIVYSKKNV
SDEEIIATCKAVGLHNTIKNLSKGYDTLLNDKANLSAGQKQLITIARAMIENAPLLILDEATSSVDTRTELLIQKAMDRL
TVGKTSFVIAHRLSTIKNADLILVMKEGDILETGNHEELLAKGGFYADLYNSQFESVS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=345592 EXW60_RS22170 WP_215587783.1 4321864..4323720(+) (rcrQ) [Bacillus mycoides strain BPN29/1]
ATGGCCAAAAATGATTATACCATTGGAGATCATGAAAAAAACTCAAAAAATGAGAGACAGATGGGCGGAGGGCATAGTCC
AATGGGTGGCAGGGCCCAAGGACAAAAAGTAAACAATTTCAAAAAAACGATTCAACAGCTGATTTCCTACTGTAAGTCTT
ATGTACCCATCGTTATTTTCGCCTTAATATTAGCTTTTGTGGGTTCTGCATTTAATGTATATGGCCCAGAAAAATTAAGT
GAAATGACCGACATTATCCAAGAAGGGATTAGGGGTGACATTGATTTAGGTGCAATCAAAAATATTGGAATCATTTTAGT
GGTTCTCTACGGATTAGGTTTGGTATTTAATTATATACAAGGGTTTATAATGGCAACGGTAACACAAAAAATCACAAAAA
AAATGCGTACAGAATTATCGCAAAAAATGAATCGAATCCCTTTAAGTTACTTTGATAAAACGAGTTATGGAAATATATTA
AGCCGTGTAACAAATGATGTTGATACAATTGGCCAAACGCTAAATAACAGCCTAGGACAATTAGTAACGGCAATCGCAAC
TTTTGTTGGCGCATTGATAATGATGTTCTATACCAACTGGATTATGGCTATAACAGGAATTGTTGCAACCTTAATTGGAT
TTATTCTAATGACATTGATTATGAAGCGTTCTCAAAAATACTTCGTACAGCAGCAGGCTGAACTTGGGAAAATCAATGGA
CATATTGAAGAAATGTATGCAGGTCACCATATCGTAAAAGCATATAACGGCGAAAAGGAAGCAAAAGAATTATTCCATAC
AATCAATGATCGTCTTTTTGATAATGCTTGGAAATCACAGTTTATGTCTGGGATTATGATGCCTATCATGCAATTTATCG
GGAACTTTGGGTATGTAGCAGTTTGTATTGTTGGTGCATTACTTGTGACAAATGGTGTAATTACAATTGGAACAATCGTT
GCCTTTATGGTCTATATTCGTTTGTTCACACAGCCTTTATCACAATTAGCACAAGCTGCAACGAATCTGCAATCTACAGC
AGCAGCAAGTGAACGTGTATTTGAATTTTTAGCAGAAGAAGAATTGTCAGATGAAAGTGAAAAAACAATGAGATTAGACA
ATGTCAAAGGGGATGTGGAATTTAATAATGTTAAATTTGGCTATGATAAAGATCGTCTAATCATAAAAGACTTCTCTGCG
AAAGTGAATGCAGGACAAAAAGTAGCTATCGTAGGTCCAACGGGCGCTGGAAAAACGACATTAGTCAATTTATTAATGCG
ATTCTATGAACTCAACAGTGGAGAAATTACTATTGATGGTGTTCCTATAAATCAATTAACTCGTGAATATGTGCATGATC
TATTCTGTATGGTACTTCAGGACACATGGCTATTCGAAGGGACGATTCGCGACAATATTGTCTATTCCAAGAAAAATGTT
TCAGATGAAGAAATCATAGCAACATGCAAAGCAGTTGGGCTGCATAATACGATTAAAAACTTATCTAAAGGTTATGATAC
CTTATTAAATGATAAAGCGAATTTATCAGCTGGACAAAAACAATTAATTACGATTGCCCGTGCGATGATTGAAAATGCCC
CATTATTAATTCTAGATGAGGCTACGAGCTCAGTTGATACACGTACGGAATTATTAATTCAAAAAGCAATGGATCGTTTA
ACAGTTGGGAAAACATCCTTTGTCATTGCACACCGTCTTTCGACGATAAAAAATGCTGACTTGATCTTAGTTATGAAAGA
GGGAGACATTTTAGAAACAGGAAACCATGAGGAGTTACTAGCGAAAGGTGGATTCTATGCGGATCTGTATAATAGTCAAT
TTGAATCAGTCTCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-333)

ABC transporter (ABC_tran)

(396-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.672

93.366

0.529

Multiple sequence alignment