Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EXW60_RS22165 Genome accession   NZ_CP035987
Coordinates   4320108..4321877 (+) Length   589 a.a.
NCBI ID   WP_215587782.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN29/1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4315108..4326877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS22140 (EXW60_22560) catA 4315393..4316043 (+) 651 WP_002141726.1 type A chloramphenicol O-acetyltransferase -
  EXW60_RS22145 (EXW60_22565) - 4316268..4316792 (+) 525 WP_215587778.1 GNAT family N-acetyltransferase -
  EXW60_RS22150 (EXW60_22570) - 4316830..4317774 (+) 945 WP_215587779.1 GNAT family N-acetyltransferase -
  EXW60_RS22155 (EXW60_22575) - 4317927..4318436 (+) 510 WP_215587780.1 GNAT family N-acetyltransferase -
  EXW60_RS22160 (EXW60_22585) - 4319563..4319973 (+) 411 WP_215587781.1 MarR family winged helix-turn-helix transcriptional regulator -
  EXW60_RS22165 (EXW60_22590) rcrP 4320108..4321877 (+) 1770 WP_215587782.1 ABC transporter ATP-binding protein Regulator
  EXW60_RS22170 (EXW60_22595) rcrQ 4321864..4323720 (+) 1857 WP_215587783.1 ABC transporter ATP-binding protein Regulator
  EXW60_RS22175 (EXW60_22600) - 4324364..4326319 (+) 1956 WP_215587784.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65182.89 Da        Isoelectric Point: 8.1847

>NTDB_id=345591 EXW60_RS22165 WP_215587782.1 4320108..4321877(+) (rcrP) [Bacillus mycoides strain BPN29/1]
MLKIFKYLKRNEWILVLFSIAFITVQVWLDLKLPDYMAEITTLIQMEGTNFSQIIGPGAYMLLCAVGSMVTAVIVGYFAA
KVAAGLSKRLRGLVFDKTLSFSLEEINRFSIASLITRSTNDVTQIQFIVAMGLQIIVKAPILAVWAIMKISGKSGQLTTA
TGIAVVVLCMMLAVIILFAIPKFKIIQTLTDNLNRVTRENLTGMRVVHAYNAKGYEENKFEKANMELTKTNLFANRLMAI
IGPGMTAIMSGLSVAIYWIGAYLINEAQMINRITIFSDIVVFSAYAMQVVMAFMMVSMIFIMLPRATVSAKRIMEVLETE
AKIKDGTVAEGKPGIVGEIEFRNVSFKYPDSENHILRNISFTAKKGETVAFIGSTGSGKTSLVNLIPRFNDVSEGEVLVD
GINVKNYRQETLHDKIGYVSQSSVLFSGTVTSNVSYGESGHMHSSLNAVKEALEIAQGKEFVEKLEGQYEGQISQGGTNV
SGGQKQRISIARAIYRKPEIYIFDDSFSALDYKTDRVLRSALRKETKDATTLIVAQRIGTIKDADRIIVLEEGEVVGNGT
HEQLMDNCETYQEIAYSQLSKEELTDGQK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=345591 EXW60_RS22165 WP_215587782.1 4320108..4321877(+) (rcrP) [Bacillus mycoides strain BPN29/1]
ATGTTGAAAATTTTTAAATATTTAAAAAGGAATGAATGGATACTTGTTCTATTTAGTATAGCATTCATTACGGTACAGGT
TTGGCTAGATTTAAAGCTACCGGACTATATGGCTGAAATCACGACATTAATCCAAATGGAAGGTACGAACTTTTCTCAAA
TTATTGGACCTGGAGCATATATGCTACTCTGTGCAGTAGGAAGTATGGTTACTGCCGTTATCGTAGGATACTTTGCTGCT
AAGGTTGCAGCGGGATTATCAAAACGTCTACGCGGATTAGTTTTTGATAAAACTTTATCTTTTTCATTGGAAGAAATTAA
TCGTTTTTCGATAGCAAGCTTGATTACTCGTTCAACTAATGATGTTACGCAAATTCAATTTATTGTGGCAATGGGATTAC
AGATAATTGTAAAAGCACCAATTCTAGCTGTTTGGGCAATCATGAAAATTTCAGGAAAGAGCGGGCAATTGACAACAGCG
ACAGGTATAGCAGTTGTCGTTTTATGCATGATGTTAGCTGTGATTATTCTATTTGCAATACCAAAGTTCAAAATCATCCA
AACTCTTACTGATAATTTAAACCGTGTAACTCGTGAGAACTTAACAGGGATGCGCGTCGTACATGCTTATAACGCTAAGG
GCTATGAAGAAAATAAATTTGAAAAAGCTAATATGGAATTAACAAAAACAAATCTTTTTGCCAATCGTTTAATGGCAATT
ATTGGGCCAGGGATGACTGCGATTATGTCTGGTTTAAGTGTTGCGATTTATTGGATTGGTGCTTATTTGATTAACGAAGC
ACAGATGATAAATCGAATTACAATTTTCTCGGATATAGTTGTTTTCTCAGCGTATGCCATGCAAGTTGTAATGGCGTTTA
TGATGGTAAGTATGATTTTTATTATGTTACCTCGTGCTACGGTATCAGCAAAACGTATTATGGAAGTACTTGAAACAGAA
GCGAAAATTAAAGATGGTACAGTTGCAGAAGGAAAACCAGGTATTGTGGGAGAGATTGAGTTCCGCAATGTTAGCTTTAA
ATATCCAGATTCAGAGAACCATATTCTTCGTAATATTAGCTTTACTGCAAAAAAAGGAGAAACGGTAGCTTTTATTGGAT
CCACGGGGAGTGGAAAAACAAGTTTGGTAAATTTAATTCCTCGTTTCAATGATGTTTCTGAAGGTGAAGTATTGGTTGAT
GGTATAAATGTAAAGAATTACAGACAAGAAACTCTACACGATAAAATTGGCTACGTTTCGCAATCGTCTGTGTTATTCAG
TGGTACTGTAACTTCGAACGTTTCCTATGGAGAATCAGGACATATGCATTCGTCACTAAATGCTGTCAAAGAAGCATTGG
AAATTGCACAAGGGAAAGAATTCGTGGAAAAACTTGAAGGACAATATGAAGGGCAGATATCACAAGGTGGTACAAACGTA
TCTGGGGGACAAAAACAGCGTATATCGATTGCTCGTGCAATTTATCGAAAACCTGAAATATATATATTCGATGACTCGTT
TTCGGCATTAGACTACAAAACAGACAGGGTTCTACGTTCTGCTTTAAGAAAAGAAACGAAGGATGCCACTACCTTAATTG
TTGCACAGCGCATCGGAACAATTAAAGATGCAGACCGCATTATTGTTCTTGAAGAGGGAGAAGTAGTTGGGAATGGAACA
CATGAACAATTAATGGATAACTGCGAGACGTATCAAGAGATTGCATATTCTCAGCTTTCGAAGGAGGAATTGACTGATGG
CCAAAAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.167

100

0.542

Multiple sequence alignment