Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW60_RS16980 Genome accession   NZ_CP035987
Coordinates   3313398..3313721 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain BPN29/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3308398..3318721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS16955 (EXW60_17295) - 3308587..3309873 (+) 1287 WP_215587481.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW60_RS16960 (EXW60_17300) sipW 3310070..3310639 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW60_RS16965 (EXW60_17305) - 3310706..3311293 (+) 588 WP_002030432.1 CalY family protein -
  EXW60_RS16970 (EXW60_17310) - 3311455..3312282 (+) 828 WP_215587482.1 DUF4047 domain-containing protein -
  EXW60_RS16975 (EXW60_17315) calY 3312721..3313314 (+) 594 WP_061675896.1 biofilm matrix protein CalY -
  EXW60_RS16980 (EXW60_17320) sinR 3313398..3313721 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  EXW60_RS16985 (EXW60_17325) - 3313801..3313935 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW60_RS16990 (EXW60_17330) inhA1 3314278..3316665 (+) 2388 WP_215587483.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW60_RS16995 (EXW60_17335) - 3316824..3318191 (+) 1368 WP_215587484.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=345586 EXW60_RS16980 WP_002064339.1 3313398..3313721(-) (sinR) [Bacillus mycoides strain BPN29/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=345586 EXW60_RS16980 WP_002064339.1 3313398..3313721(-) (sinR) [Bacillus mycoides strain BPN29/1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment