Detailed information NTG0345569

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GG844_RS17195
• Genome accession: NZ_CP045719
• Coordinates: 2533201..2534364 (-)
• Length: 387 a.a.
• NCBI ID: WP_000136717.1
• Uniprot ID: -
• Organism: Vibrio cholerae O395 substr. TCP2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2528201..2539364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GG844_RS17175 (GG844_17175)	sthA	2528864..2530264 (+)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-
GG844_RS17180 (GG844_17180)	rpoH	2530466..2531326 (-)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
GG844_RS17185 (GG844_17185)	ftsX	2531496..2532488 (-)	993	WP_000279340.1	permease-like cell division protein FtsX	-
GG844_RS17190 (GG844_17190)	ftsE	2532478..2533152 (-)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
GG844_RS17195 (GG844_17195)	pilA	2533201..2534364 (-)	1164	WP_000136717.1	signal recognition particle-docking protein FtsY	Machinery gene
GG844_RS17200 (GG844_17200)	rsmD	2534568..2535167 (+)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GG844_RS17205 (GG844_17205)	-	2535164..2535430 (+)	267	WP_000645840.1	DUF1145 domain-containing protein	-
GG844_RS17210 (GG844_17210)	-	2535479..2536108 (-)	630	WP_000062277.1	lysoplasmalogenase	-
GG844_RS17215 (GG844_17215)	-	2536225..2536483 (-)	259	Protein_2262	hypothetical protein	-
GG844_RS17225 (GG844_17225)	-	2536986..2537354 (-)	369	WP_001289435.1	DUF4145 domain-containing protein	-
GG844_RS17230 (GG844_17230)	-	2537559..2537888 (+)	330	WP_001117042.1	DUF2500 domain-containing protein	-
GG844_RS17235 (GG844_17235)	-	2538058..2538528 (+)	471	WP_000224703.1	Dps family protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 42344.03 Da
• Isoelectric Point: 4.5243

>NTDB_id=345569 GG844_RS17195 WP_000136717.1 2533201..2534364(-) (pilA) [Vibrio cholerae O395 substr. TCP2]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETATVEPARIVEQEKP
TESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRDGEALYGLL
KEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQVP
VIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAISQ
AKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1164 bp

>NTDB_id=345569 GG844_RS17195 WP_000136717.1 2533201..2534364(-) (pilA) [Vibrio cholerae O395 substr. TCP2]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCACGTATTGTTGAACAAGAGAAACCG
ACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATATTGGCGCTGGCTTCTTTGGCCTGTT
TAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGGATACGA
CCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGTCTGCTG
AAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACACTGAGAAAAAACCTTACGTGATCTT
GATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAACAGTTCCAAGCGCAAGGCAAGAAAG
TGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAAGTGCCT
GTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGGGATTGA
CGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTGCGCGTGA
TGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATCAGTCAG
GCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGATGGCACCGCTAAAGGTGGCGTGAT
TTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTCCATTTG
CAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (184-383)

• SRP54-type protein, helical bundle domain (SRP54_N) (103-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.599	86.305	0.437