Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   EXW26_RS25410 Genome accession   NZ_CP035984
Coordinates   4933145..4934494 (-) Length   449 a.a.
NCBI ID   WP_193652142.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN211     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4928145..4939494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW26_RS25375 (EXW26_25930) - 4928266..4928961 (-) 696 WP_215551424.1 hypothetical protein -
  EXW26_RS25380 (EXW26_25935) - 4928948..4929736 (-) 789 WP_215551423.1 hypothetical protein -
  EXW26_RS25385 (EXW26_25940) - 4929768..4930352 (-) 585 WP_215551422.1 hypothetical protein -
  EXW26_RS25390 (EXW26_25945) - 4930471..4930965 (-) 495 WP_215551421.1 hypothetical protein -
  EXW26_RS25395 (EXW26_25950) hpf 4931254..4931796 (-) 543 WP_002034758.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EXW26_RS25400 (EXW26_25955) cspC 4932117..4932314 (-) 198 WP_001990088.1 cold shock protein CspC -
  EXW26_RS25405 (EXW26_25960) - 4932441..4933145 (-) 705 WP_215551420.1 ComF family protein -
  EXW26_RS25410 (EXW26_25965) comFA 4933145..4934494 (-) 1350 WP_193652142.1 ATP-dependent helicase ComFA Machinery gene
  EXW26_RS25415 (EXW26_25970) - 4934625..4935941 (-) 1317 WP_215551419.1 NlpC/P60 family protein -
  EXW26_RS25420 (EXW26_25975) - 4936206..4936520 (-) 315 WP_002089608.1 helix-turn-helix domain-containing protein -
  EXW26_RS25425 (EXW26_25980) - 4936683..4937525 (-) 843 WP_002016143.1 DegV family protein -
  EXW26_RS25430 (EXW26_25985) - 4937917..4938552 (+) 636 WP_002143754.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50869.25 Da        Isoelectric Point: 9.4469

>NTDB_id=345537 EXW26_RS25410 WP_193652142.1 4933145..4934494(-) (comFA) [Bacillus mycoides strain BPN211]
MLAGRQLLLEELSSDLQNKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFQWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=345537 EXW26_RS25410 WP_193652142.1 4933145..4934494(-) (comFA) [Bacillus mycoides strain BPN211]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGAATAAATTGGATCATCTGAAAAGGAATCG
AGACGTCGTTTGTGTGCAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGTAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCAGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTTTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTTAAAAATTTGCAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTTCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGACTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.567

98.218

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

41.206

88.641

0.365

Multiple sequence alignment