Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   HIB_RS06090 Genome accession   NC_016809
Coordinates   1190909..1192135 (-) Length   408 a.a.
NCBI ID   WP_015702011.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185909..1197135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS06065 - 1187262..1187864 (+) 603 Protein_1157 cyclase family protein -
  HIB_RS06070 (HIB_11570) - 1187954..1188634 (+) 681 WP_172451698.1 MIP/aquaporin family protein -
  HIB_RS10095 - 1188703..1189354 (-) 652 Protein_1159 IS1595 family transposase -
  HIB_RS06080 (HIB_11610) - 1189729..1190103 (+) 375 WP_015702009.1 transposase -
  HIB_RS10245 (HIB_11620) - 1190100..1190465 (+) 366 WP_015702010.1 IS3 family transposase -
  HIB_RS10250 (HIB_11630) - 1190669..1190908 (+) 240 WP_005628693.1 IS3 family transposase -
  HIB_RS06090 (HIB_11640) kpsS 1190909..1192135 (-) 1227 WP_015702011.1 capsule biosynthesis protein Regulator
  HIB_RS06095 (HIB_11650) - 1192188..1194230 (-) 2043 WP_015702012.1 capsular polysaccharide biosynthesis protein -
  HIB_RS06100 (HIB_11660) - 1194337..1196184 (-) 1848 WP_015702013.1 capsular polysaccharide synthesis protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 47404.42 Da        Isoelectric Point: 9.4781

>NTDB_id=34552 HIB_RS06090 WP_015702011.1 1190909..1192135(-) (kpsS) [Haemophilus influenzae 10810]
MNHYLDELVQSSKRILLLQGPIGHFFTDLSAWLVGQGKTVYKINFNGGDEHFYPSSIENTIAYRGSVSEFYPYLQLFCKQ
HNIDAMVCFGDNRRYHKIAKKISQDEQIPFWVFEEGYFRPDYVTLEKQGVNAFSPLPRQADFYLEQAENLPEPAIPLKLA
KGFLPMAKVAIAYYTKVYFGRDNYPKYQHHRILNLKYYIKLWVTSGIKRACYYLRDRTFARKVNRGKLGDFFVVPLQVYD
DSQVKVHCDFNSVGAFLREVLQSFAESAPNNLNLVIKHHPMDRGFIHYDPVIQEFENRYPHLKGRLFYVHDVPLPVLLRR
GKGMVTLNSTSGISALLHGMPVITLGRANYHFEGLTHQGDLSSFWQNPTKPDPFVFEAYRKYHLNKTMINGSFYNRVIID
LPPKSWTG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=34552 HIB_RS06090 WP_015702011.1 1190909..1192135(-) (kpsS) [Haemophilus influenzae 10810]
ATGAACCACTATTTAGATGAATTAGTCCAAAGTTCGAAACGGATTTTACTTTTGCAAGGACCAATCGGCCACTTTTTTAC
CGATCTTTCAGCTTGGTTAGTGGGACAAGGAAAAACCGTTTATAAAATCAATTTTAACGGTGGCGATGAACATTTTTATC
CGTCATCGATTGAAAACACGATTGCTTATCGTGGCTCAGTGAGTGAGTTCTACCCTTACCTGCAACTATTTTGCAAACAA
CACAATATTGATGCGATGGTTTGCTTTGGTGACAACCGTAGATACCACAAAATCGCAAAAAAAATATCACAAGATGAACA
GATTCCATTTTGGGTGTTTGAAGAAGGCTATTTCCGTCCTGATTACGTGACACTCGAAAAACAAGGGGTAAATGCGTTCT
CCCCTCTTCCTCGCCAAGCAGATTTCTATCTTGAGCAAGCCGAAAATTTACCTGAGCCAGCTATACCACTTAAATTAGCC
AAAGGTTTTTTACCGATGGCAAAAGTGGCAATCGCTTATTACACTAAAGTTTACTTTGGGCGAGATAATTACCCGAAATA
CCAACACCACCGCATTCTGAATCTGAAATACTATATAAAACTATGGGTTACATCAGGCATCAAGCGTGCTTGTTATTACT
TGCGTGATCGTACCTTTGCAAGAAAAGTCAACCGTGGGAAATTAGGTGATTTCTTTGTTGTGCCATTGCAAGTTTATGAT
GACAGCCAAGTGAAAGTACATTGTGATTTCAACAGTGTCGGCGCATTCTTGCGTGAAGTATTGCAATCTTTTGCTGAATC
AGCACCAAACAATCTCAATCTAGTCATTAAGCATCACCCAATGGATCGGGGTTTTATTCATTATGATCCTGTTATTCAAG
AATTTGAAAACCGTTATCCGCACTTAAAAGGGCGACTATTCTATGTGCATGATGTGCCATTGCCCGTTCTGCTTCGTCGC
GGTAAAGGCATGGTAACGCTGAATAGCACGAGTGGTATTTCTGCCTTATTACATGGTATGCCTGTCATCACACTTGGACG
AGCCAATTATCATTTTGAAGGGCTTACACACCAAGGTGACTTATCCTCATTTTGGCAAAACCCTACTAAGCCCGATCCAT
TCGTTTTTGAGGCTTACCGCAAATATCATCTGAATAAAACCATGATTAATGGTAGTTTTTATAATCGAGTGATTATTGAT
CTGCCCCCTAAAAGTTGGACAGGTTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(84-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.422

96.324

0.37

Multiple sequence alignment