Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GHT02_RS22850 Genome accession   NZ_CP045712
Coordinates   4737414..4738841 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain FHI_NMBU_11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4732414..4743841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHT02_RS22820 (GHT02_22785) yeeZ 4732469..4733293 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  GHT02_RS22825 (GHT02_22790) yeeY 4733339..4734268 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GHT02_RS22830 (GHT02_22795) yoeI 4734483..4734545 (+) 63 WP_010723108.1 membrane protein YoeI -
  GHT02_RS22835 (GHT02_22800) plaP 4734535..4735893 (+) 1359 WP_086218987.1 putrescine/proton symporter PlaP -
  GHT02_RS22840 (GHT02_22805) tsuA 4736072..4737130 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  GHT02_RS22845 (GHT02_22810) tsuB 4737144..4737371 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GHT02_RS22850 (GHT02_22815) sbcB 4737414..4738841 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  GHT02_RS22855 (GHT02_22820) dacD 4739050..4740216 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GHT02_RS22860 (GHT02_22825) sbmC 4740335..4740808 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GHT02_RS22865 (GHT02_22830) yeeA 4741006..4742064 (+) 1059 WP_001200891.1 FUSC family protein -
  GHT02_RS22870 (GHT02_22835) tmaR 4742236..4742565 (+) 330 WP_000450409.1 DUF496 family protein -
  GHT02_RS22875 (GHT02_22840) - 4742666..4742848 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GHT02_RS22880 (GHT02_22845) - 4742920..4743048 (+) 129 Protein_4512 transposase domain-containing protein -
  GHT02_RS22885 (GHT02_22850) - 4743337..4743417 (-) 81 Protein_4513 hypothetical protein -
  GHT02_RS22890 (GHT02_22855) yeeW 4743463..4743657 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=345497 GHT02_RS22850 WP_000980608.1 4737414..4738841(-) (sbcB) [Escherichia coli strain FHI_NMBU_11]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=345497 GHT02_RS22850 WP_000980608.1 4737414..4738841(-) (sbcB) [Escherichia coli strain FHI_NMBU_11]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment