Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GHT02_RS19415 Genome accession   NZ_CP045712
Coordinates   4013469..4013984 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain FHI_NMBU_11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4008469..4018984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHT02_RS19370 (GHT02_19350) csrA 4009056..4009241 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GHT02_RS19400 (GHT02_19380) yqaB 4010699..4011265 (+) 567 WP_086218936.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GHT02_RS19405 (GHT02_19385) yqaA 4011262..4011690 (+) 429 WP_001287457.1 YqaA family protein -
  GHT02_RS19410 (GHT02_19390) gshA 4011763..4013319 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  GHT02_RS19415 (GHT02_19395) luxS 4013469..4013984 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  GHT02_RS19420 (GHT02_19400) emrB 4014048..4015586 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GHT02_RS19425 (GHT02_19405) emrA 4015603..4016775 (-) 1173 WP_024175239.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GHT02_RS19430 (GHT02_19410) emrR 4016902..4017432 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GHT02_RS19435 (GHT02_19415) ygaH 4017523..4017858 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  GHT02_RS19440 (GHT02_19420) ygaZ 4017848..4018585 (-) 738 WP_000445655.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=345488 GHT02_RS19415 WP_001130207.1 4013469..4013984(+) (luxS) [Escherichia coli strain FHI_NMBU_11]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=345488 GHT02_RS19415 WP_001130207.1 4013469..4013984(+) (luxS) [Escherichia coli strain FHI_NMBU_11]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731