Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GHT02_RS06725 Genome accession   NZ_CP045712
Coordinates   1345628..1346233 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FHI_NMBU_11     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1340628..1351233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHT02_RS06705 (GHT02_06725) aes 1340665..1341624 (+) 960 WP_000801846.1 acetyl esterase -
  GHT02_RS06710 (GHT02_06730) hemH 1341621..1342583 (-) 963 WP_001250088.1 ferrochelatase -
  GHT02_RS06715 (GHT02_06735) adk 1342819..1343463 (-) 645 WP_001220233.1 adenylate kinase -
  GHT02_RS06720 (GHT02_06740) htpG 1343644..1345518 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  GHT02_RS06725 (GHT02_06745) recR 1345628..1346233 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GHT02_RS06730 (GHT02_06750) ybaB 1346233..1346562 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GHT02_RS06735 (GHT02_06755) dnaX 1346615..1348546 (-) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  GHT02_RS06740 (GHT02_06760) apt 1348675..1349226 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GHT02_RS06745 (GHT02_06765) ybaN 1349379..1349756 (-) 378 WP_001188905.1 DUF454 family protein -
  GHT02_RS06750 (GHT02_06770) priC 1349826..1350353 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  GHT02_RS06755 (GHT02_06775) rsmS 1350367..1350528 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GHT02_RS27835 - 1350581..1350679 (-) 99 Protein_1348 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=345441 GHT02_RS06725 WP_001195025.1 1345628..1346233(-) (recR) [Escherichia coli strain FHI_NMBU_11]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=345441 GHT02_RS06725 WP_001195025.1 1345628..1346233(-) (recR) [Escherichia coli strain FHI_NMBU_11]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment