Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW31_RS09950 Genome accession   NZ_CP035974
Coordinates   1853047..1853334 (+) Length   95 a.a.
NCBI ID   WP_002148618.1    Uniprot ID   J8DCP1
Organism   Bacillus mycoides strain BPN102     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848047..1858334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW31_RS09930 (EXW31_10065) - 1849218..1849418 (+) 201 WP_215598275.1 DUF4083 domain-containing protein -
  EXW31_RS09935 (EXW31_10070) - 1849446..1849907 (+) 462 WP_002158230.1 NUDIX hydrolase -
  EXW31_RS09940 (EXW31_10075) nadE 1849957..1850775 (-) 819 WP_002158229.1 ammonia-dependent NAD(+) synthetase -
  EXW31_RS09945 (EXW31_10080) - 1851046..1852926 (+) 1881 WP_215598276.1 FtsX-like permease family protein -
  EXW31_RS09950 (EXW31_10085) abrB 1853047..1853334 (+) 288 WP_002148618.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW31_RS09955 (EXW31_10090) - 1853515..1854465 (+) 951 WP_002158227.1 serine protease -
  EXW31_RS09960 (EXW31_10095) - 1854563..1854664 (+) 102 Protein_1821 IS6 family transposase -
  EXW31_RS09965 (EXW31_10100) - 1854679..1855782 (-) 1104 WP_215598277.1 ABC transporter ATP-binding protein -
  EXW31_RS09970 (EXW31_10105) - 1856173..1857036 (-) 864 WP_215598278.1 PucR family transcriptional regulator -
  EXW31_RS09975 (EXW31_10110) - 1857106..1857966 (-) 861 WP_002202312.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10621.33 Da        Isoelectric Point: 5.1423

>NTDB_id=345414 EXW31_RS09950 WP_002148618.1 1853047..1853334(+) (abrB) [Bacillus mycoides strain BPN102]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGSITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=345414 EXW31_RS09950 WP_002148618.1 1853047..1853334(+) (abrB) [Bacillus mycoides strain BPN102]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATTAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAGCATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DCP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547

Multiple sequence alignment