Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW31_RS07965 Genome accession   NZ_CP035974
Coordinates   1455641..1456243 (-) Length   200 a.a.
NCBI ID   WP_131231670.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN102     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450641..1461243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW31_RS07945 (EXW31_08050) dnaD 1450947..1451654 (+) 708 WP_078181042.1 DNA replication protein DnaD -
  EXW31_RS07950 (EXW31_08055) nth 1451670..1452317 (+) 648 WP_002158563.1 endonuclease III -
  EXW31_RS07955 (EXW31_08060) - 1452321..1452839 (+) 519 WP_131231668.1 YpoC family protein -
  EXW31_RS07960 (EXW31_08065) - 1452860..1455574 (-) 2715 WP_215598211.1 PBP1A family penicillin-binding protein -
  EXW31_RS07965 (EXW31_08070) recU 1455641..1456243 (-) 603 WP_131231670.1 Holliday junction resolvase RecU Machinery gene
  EXW31_RS07970 (EXW31_08075) - 1456347..1457372 (+) 1026 WP_002158560.1 DUF2515 domain-containing protein -
  EXW31_RS29930 - 1457713..1457859 (-) 147 WP_306292139.1 phage portal protein -
  EXW31_RS07975 (EXW31_08080) - 1457978..1458220 (+) 243 WP_002158558.1 hypothetical protein -
  EXW31_RS07980 (EXW31_08085) - 1458236..1458580 (+) 345 WP_016104342.1 YppE family protein -
  EXW31_RS07985 (EXW31_08090) - 1458606..1458797 (-) 192 WP_002030817.1 YppF family protein -
  EXW31_RS07990 (EXW31_08095) - 1458975..1459661 (+) 687 WP_078181039.1 YppG family protein -
  EXW31_RS07995 (EXW31_08100) - 1459818..1460228 (+) 411 WP_131231671.1 CotD family spore coat protein -
  EXW31_RS08000 (EXW31_08105) - 1460285..1460839 (+) 555 WP_078181038.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23377.62 Da        Isoelectric Point: 9.5601

>NTDB_id=345413 EXW31_RS07965 WP_131231670.1 1455641..1456243(-) (recU) [Bacillus mycoides strain BPN102]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGISFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345413 EXW31_RS07965 WP_131231670.1 1455641..1456243(-) (recU) [Bacillus mycoides strain BPN102]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCCCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATATATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTTCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment