Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW31_RS06605 Genome accession   NZ_CP035974
Coordinates   1201183..1201506 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus mycoides strain BPN102     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196183..1206506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW31_RS06580 (EXW31_06695) - 1196446..1197732 (+) 1287 WP_078182179.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW31_RS06585 (EXW31_06700) sipW 1197933..1198502 (+) 570 WP_016104223.1 signal peptidase I SipW -
  EXW31_RS06590 (EXW31_06705) - 1198564..1199151 (+) 588 WP_002158775.1 CalY family protein -
  EXW31_RS06595 (EXW31_06710) - 1199287..1200120 (+) 834 WP_235713230.1 DUF4047 domain-containing protein -
  EXW31_RS06600 (EXW31_06715) calY 1200508..1201101 (+) 594 WP_002064338.1 biofilm matrix protein CalY -
  EXW31_RS06605 (EXW31_06720) sinR 1201183..1201506 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  EXW31_RS06610 (EXW31_06725) - 1201586..1201720 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW31_RS06615 (EXW31_06730) inhA1 1202062..1204449 (+) 2388 WP_061688800.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW31_RS06620 (EXW31_06735) - 1204621..1205988 (+) 1368 WP_078173276.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=345411 EXW31_RS06605 WP_002064339.1 1201183..1201506(-) (sinR) [Bacillus mycoides strain BPN102]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=345411 EXW31_RS06605 WP_002064339.1 1201183..1201506(-) (sinR) [Bacillus mycoides strain BPN102]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCACTAACAGAACTCGCCGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTCGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACGTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment