Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HIB_RS04795 Genome accession   NC_016809
Coordinates   935215..936417 (+) Length   400 a.a.
NCBI ID   WP_041175049.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930215..941417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS04765 (HIB_08930) - 930324..931004 (-) 681 WP_005655549.1 metallophosphoesterase family protein -
  HIB_RS04770 (HIB_08940) nadR 931001..932242 (-) 1242 Protein_899 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  HIB_RS04775 (HIB_08950) ribB 932485..933132 (+) 648 WP_015701852.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  HIB_RS04780 (HIB_08960) - 933159..933995 (+) 837 WP_015701853.1 glycosyltransferase family 25 protein -
  HIB_RS04785 (HIB_08970) trmL 934044..934526 (-) 483 WP_005663142.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  HIB_RS04790 (HIB_08980) rsmD 934537..935118 (-) 582 WP_015701854.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HIB_RS04795 (HIB_08990) pilA 935215..936417 (+) 1203 WP_041175049.1 signal recognition particle-docking protein FtsY Machinery gene
  HIB_RS04800 (HIB_09000) ftsE 936436..937092 (+) 657 WP_005648452.1 cell division ATP-binding protein FtsE -
  HIB_RS04805 (HIB_09010) ftsX 937102..938034 (+) 933 WP_015701856.1 permease-like cell division protein FtsX -
  HIB_RS04810 (HIB_09020) - 938129..939310 (-) 1182 WP_005666204.1 acetyl-CoA C-acetyltransferase -
  HIB_RS04815 (HIB_09030) - 939325..940668 (-) 1344 WP_015701857.1 TIGR00366 family protein -
  HIB_RS04820 (HIB_09040) - 940671..941336 (-) 666 WP_005660145.1 3-oxoacid CoA-transferase subunit B -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44383.78 Da        Isoelectric Point: 4.5471

>NTDB_id=34540 HIB_RS04795 WP_041175049.1 935215..936417(+) (pilA) [Haemophilus influenzae 10810]
MAEENKKGGFWASLFGRNKKQDEPKIEPIIEEEKIKDIEPSIEKFEANDLVEEEKIQEISTALEPIEEIIEAKNLEDDLQ
PVVEIETREKPSEGGFFSRLVKGLLKTKQNIGAGFRGFFLGKKIDDELFEELEEQLLIADIGVPTTSKIIKNLTEHASRK
ELQDAELLYQQLKVEMADILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAAAVE
QLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMDELKKIVRVMKKYDETAPHEIMLT
LDAGTGQNAISQAKLFNEAVGLTGISLTKLDGTAKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALFVHEEE

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=34540 HIB_RS04795 WP_041175049.1 935215..936417(+) (pilA) [Haemophilus influenzae 10810]
ATGGCTGAAGAAAATAAAAAAGGCGGATTTTGGGCATCGTTATTTGGACGTAATAAAAAGCAAGATGAACCTAAAATTGA
GCCAATAATTGAAGAAGAAAAGATAAAAGATATCGAGCCGTCTATTGAAAAATTTGAAGCTAATGATTTAGTCGAAGAAG
AAAAAATACAGGAAATTTCAACCGCACTTGAGCCGATTGAAGAAATCATCGAAGCGAAAAATTTAGAAGATGATCTTCAG
CCCGTTGTTGAAATTGAAACTCGCGAAAAGCCAAGTGAAGGGGGCTTTTTTAGTCGTTTAGTTAAGGGATTACTGAAAAC
TAAACAAAATATTGGCGCGGGTTTTCGTGGTTTTTTCTTAGGAAAGAAAATTGATGATGAGTTGTTTGAAGAATTAGAAG
AACAACTTTTAATTGCGGATATTGGTGTGCCGACAACAAGTAAAATCATCAAAAATTTGACTGAACACGCAAGCCGCAAA
GAATTACAAGATGCCGAGCTTTTATATCAACAATTAAAAGTAGAAATGGCGGATATTCTTGAGCCAGTAGCACAACCTTT
AGAGATTGATAGCACGAAAAAACCTTATGTGATTTTAATGGTGGGCGTAAATGGCGTGGGTAAAACAACGACAATTGGTA
AGCTCGCACGTAAATTTCAGGCTGAAGGAAAATCAGTGATGCTTGCGGCGGGCGATACTTTCCGTGCAGCGGCCGTTGAG
CAGCTTCAAGTTTGGGGAGAACGCAATCATATTCCAGTTGTTGCGCAAAGCACGGGTTCTGATTCTGCGTCTGTGATTTT
TGATGCGATGCAATCAGCGGCTGCACGCAATATTGATATTCTTATTGCGGATACGGCGGGTCGTTTACAAAATAAAAATA
ACTTAATGGACGAACTGAAAAAAATTGTTCGTGTTATGAAAAAATATGATGAAACTGCGCCACATGAAATTATGCTTACG
CTGGATGCTGGCACGGGACAAAATGCCATTAGCCAAGCGAAGTTATTTAATGAGGCTGTGGGTTTAACAGGAATCTCTCT
AACAAAATTAGATGGCACGGCAAAAGGTGGCGTGATTTTTGCCATAGCCGATCAGTTTAAGTTGCCTATTCGCTATATCG
GTGTAGGCGAGAAAATTGAAGATTTACGTGAGTTTAATGCGAAAGAATTTATTGAGGCATTATTCGTTCATGAAGAAGAA
TAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(196-395)

SRP54-type protein, helical bundle domain (SRP54_N)

(113-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.269

100

0.45

Multiple sequence alignment