Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EXW35_RS13125 Genome accession   NZ_CP035965
Coordinates   2612695..2614569 (+) Length   624 a.a.
NCBI ID   WP_215551055.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN09/1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607695..2619569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW35_RS13110 (EXW35_13405) - 2608049..2609164 (+) 1116 WP_002168304.1 FAD-binding oxidoreductase -
  EXW35_RS13115 (EXW35_13410) pssA 2609592..2610083 (-) 492 WP_002085344.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EXW35_RS13120 (EXW35_13415) - 2610452..2612698 (+) 2247 WP_215551054.1 ABC transporter ATP-binding protein -
  EXW35_RS13125 (EXW35_13420) rcrQ 2612695..2614569 (+) 1875 WP_215551055.1 ABC transporter ATP-binding protein Regulator
  EXW35_RS13130 (EXW35_13425) - 2615063..2615257 (+) 195 WP_002099904.1 hypothetical protein -
  EXW35_RS13135 (EXW35_13430) - 2616002..2617720 (+) 1719 WP_050000464.1 thiamine pyrophosphate-binding protein -
  EXW35_RS13140 (EXW35_13435) - 2617812..2619242 (+) 1431 WP_016127051.1 PQQ-dependent sugar dehydrogenase -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 69131.08 Da        Isoelectric Point: 6.4361

>NTDB_id=345367 EXW35_RS13125 WP_215551055.1 2612695..2614569(+) (rcrQ) [Bacillus mycoides strain BPN09/1]
MSDRKIENRKQSGPGPGGGGPMGGGMRKIEKAKNFKGTMNKLLQYLKPYKLSILIVILFAIGSAAFTIVGPKILGNATTK
LFEGLVSKVSGAPGAAIDFTYIGNIVILLLGLYILSTVFGIIQGYIISGVAQKVSYNFRKEIDEKINRMPLKYFDKTTHG
EVLSRITNDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALLILPVSMILIMAVVKRSQKYFKSQQEYLGH
VNGQVEEIYSGHNIVKAFNKEEEEVKKFENVNDTLYHSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAVKRTIAVG
DILAFVQYVRSFTQPIAQVAQIANVLQSTAAAAERVFEFLEEEEEVPEAENPVKLQKVQGEVTFQDVQFGYNPDKIIINN
FSSNIKPGQKVAIVGPTGAGKTTIVKLLMRFYDINSGAICIDGHDIKDFTREDLRNMFGMVLQDTWLFNGSIMENIRYGR
LDATDEEVIEAAKAAHVHNFVKTLPNKYQMELNEEASNVSQGQKQLLTIARALIADPKILILDEATSSIDTRTEVLIQKA
MENLMEGRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLKADGFYASLYNSQFEGADAS

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=345367 EXW35_RS13125 WP_215551055.1 2612695..2614569(+) (rcrQ) [Bacillus mycoides strain BPN09/1]
ATGAGTGATAGAAAAATAGAAAATAGAAAACAAAGCGGCCCTGGTCCTGGCGGTGGCGGTCCTATGGGCGGCGGCATGAG
AAAGATTGAGAAAGCAAAAAACTTCAAAGGAACGATGAATAAACTCCTTCAATACTTGAAGCCCTATAAATTATCAATCT
TAATCGTTATCCTTTTCGCAATCGGCAGTGCAGCCTTTACAATCGTTGGTCCAAAAATTTTAGGAAACGCGACAACAAAA
CTTTTCGAAGGACTCGTAAGCAAAGTATCAGGAGCACCCGGTGCGGCCATTGATTTTACCTATATCGGAAACATTGTCAT
TTTACTCCTTGGATTATATATACTGAGCACTGTGTTTGGTATTATCCAGGGGTACATTATTTCTGGAGTAGCTCAAAAAG
TATCTTATAACTTCAGAAAAGAAATCGATGAAAAAATTAACCGTATGCCGCTGAAATACTTTGATAAAACAACGCACGGC
GAAGTATTATCGAGAATTACAAATGACGTAGATACGGTGAGCCAAACTTTAAACCAAAGTATGTCGCAAATCATCACATC
CGTTATTACAATCATCGGTGTACTTATCATGATGTTATCAATCAGCTGGCAAATGACATTAGTGGCGCTTTTAATATTGC
CAGTATCGATGATTCTCATCATGGCAGTCGTAAAACGATCACAAAAATACTTCAAATCCCAGCAAGAATATTTAGGACAC
GTAAACGGTCAGGTCGAAGAAATTTATAGTGGTCACAATATCGTAAAAGCCTTCAACAAAGAAGAAGAAGAAGTGAAAAA
ATTCGAAAATGTAAATGATACCCTTTACCATTCCGCATGGAAATCTCAATTTTTATCTGGAATGATGATGCCGATTATGA
CATTTATCGGTAATATCGGTTACGTCGCTGTATCTATTTTAGGCGGGTGGCTTGCGGTAAAGAGAACCATCGCAGTTGGA
GACATTTTAGCCTTTGTGCAATATGTTAGAAGCTTTACGCAACCAATCGCTCAAGTAGCACAAATCGCGAACGTACTTCA
ATCTACTGCAGCTGCTGCAGAAAGAGTCTTCGAATTTTTAGAAGAAGAAGAGGAAGTGCCAGAAGCAGAAAATCCAGTGA
AGCTGCAAAAAGTTCAAGGAGAAGTTACCTTCCAAGATGTTCAATTTGGATACAATCCAGATAAAATCATCATCAATAAT
TTCTCATCTAACATTAAACCTGGACAAAAGGTAGCAATCGTCGGACCAACCGGAGCTGGTAAAACAACGATTGTAAAACT
GTTAATGCGTTTCTATGACATAAACAGCGGTGCAATATGTATCGACGGTCACGATATAAAAGACTTCACGCGAGAAGACC
TGCGCAACATGTTTGGTATGGTACTTCAAGACACTTGGCTATTTAACGGCTCCATCATGGAAAATATACGTTACGGTAGA
CTCGATGCTACAGACGAAGAAGTAATTGAAGCAGCGAAAGCAGCTCACGTTCACAACTTCGTAAAAACATTACCAAATAA
ATATCAAATGGAACTAAACGAAGAAGCAAGCAACGTATCCCAAGGACAAAAGCAACTACTAACAATTGCACGTGCCCTTA
TAGCGGATCCGAAAATATTAATACTCGATGAAGCAACAAGCTCCATTGACACTCGTACAGAAGTACTGATTCAAAAAGCG
ATGGAAAACCTTATGGAAGGTAGAACAAGCTTCATTATCGCTCATAGATTATCAACAATACGTGATGCAGATTTAATCCT
TGTCATGAAAGACGGAGATATTGTAGAACAAGGTAATCATGAAGAGTTATTGAAAGCTGATGGTTTCTATGCTTCGCTTT
ATAATAGTCAGTTTGAAGGTGCGGATGCTTCTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-335)

ABC transporter (ABC_tran)

(399-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

93.429

0.481

Multiple sequence alignment