Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EXW35_RS06515 Genome accession   NZ_CP035965
Coordinates   1287961..1288284 (-) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain BPN09/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282961..1293284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW35_RS06490 (EXW35_06625) - 1283141..1284427 (+) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -
  EXW35_RS06495 (EXW35_06630) sipW 1284624..1285193 (+) 570 WP_002064334.1 signal peptidase I SipW -
  EXW35_RS06500 (EXW35_06635) - 1285260..1285847 (+) 588 WP_000172837.1 CalY family protein -
  EXW35_RS06505 (EXW35_06640) - 1286009..1286842 (+) 834 WP_087995600.1 DUF4047 domain-containing protein -
  EXW35_RS06510 (EXW35_06645) calY 1287285..1287878 (+) 594 WP_002030430.1 biofilm matrix protein CalY -
  EXW35_RS06515 (EXW35_06650) sinR 1287961..1288284 (-) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  EXW35_RS06520 (EXW35_06655) - 1288364..1288498 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  EXW35_RS06525 (EXW35_06660) inhA1 1288841..1291228 (+) 2388 WP_098167303.1 M6 family metalloprotease immune inhibitor InhA1 -
  EXW35_RS06530 (EXW35_06665) - 1291386..1292753 (+) 1368 WP_078178273.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=345362 EXW35_RS06515 WP_002030429.1 1287961..1288284(-) (sinR) [Bacillus mycoides strain BPN09/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=345362 EXW35_RS06515 WP_002030429.1 1287961..1288284(-) (sinR) [Bacillus mycoides strain BPN09/1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment