Detailed information NTG0345356

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: EXW35_RS05935
• Genome accession: NZ_CP035965
• Coordinates: 1175513..1178113 (+)
• Length: 866 a.a.
• NCBI ID: WP_215550872.1
• Uniprot ID: -
• Organism: Bacillus mycoides strain BPN09/1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1170513..1183113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXW35_RS05900 (EXW35_06025)	prsA	1171313..1172170 (-)	858	WP_002125911.1	peptidylprolyl isomerase PrsA	-
EXW35_RS05905 (EXW35_06030)	-	1172301..1172432 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
EXW35_RS05910 (EXW35_06035)	-	1172533..1173390 (+)	858	WP_002125914.1	YitT family protein	-
EXW35_RS05915 (EXW35_06040)	-	1173417..1173614 (-)	198	WP_002011309.1	DUF3813 domain-containing protein	-
EXW35_RS05920 (EXW35_06045)	-	1173615..1173755 (-)	141	WP_000516816.1	hypothetical protein	-
EXW35_RS05925 (EXW35_06050)	-	1173861..1174670 (-)	810	WP_002030271.1	Cof-type HAD-IIB family hydrolase	-
EXW35_RS05930 (EXW35_06055)	-	1175161..1175340 (+)	180	WP_000531422.1	YjzC family protein	-
EXW35_RS05935 (EXW35_06060)	clpC	1175513..1178113 (+)	2601	WP_215550872.1	ATP-dependent chaperone ClpB	Regulator
EXW35_RS05940 (EXW35_06065)	-	1178147..1178329 (-)	183	WP_001211111.1	YjzD family protein	-
EXW35_RS05945 (EXW35_06070)	-	1178485..1179219 (+)	735	WP_002030268.1	hydrolase	-
EXW35_RS05950 (EXW35_06075)	-	1179249..1180121 (+)	873	WP_002086991.1	NAD(P)-dependent oxidoreductase	-
EXW35_RS05955 (EXW35_06080)	comZ	1180186..1180362 (+)	177	WP_002011319.1	ComZ family protein	Regulator
EXW35_RS05960 (EXW35_06085)	fabH	1180796..1181728 (+)	933	WP_001100550.1	beta-ketoacyl-ACP synthase III	-
EXW35_RS05965 (EXW35_06090)	fabF	1181760..1182998 (+)	1239	WP_002030364.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97579.74 Da
• Isoelectric Point: 5.2013

>NTDB_id=345356 EXW35_RS05935 WP_215550872.1 1175513..1178113(+) (clpC) [Bacillus mycoides strain BPN09/1]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLTLLEQQDGLAVRIFQKMNVDIEALKQGVESLIKKKPSVTGSGAE
AGKLYVTGALQQLLVRAGKEAEKLRDDYISIEHVLLAFSEEKGDINQLFAKFYITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDLGSQERLKTLQRELSDLKEVASSMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQTLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLEGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTRNEIKGIVDKIVQELQGRLADRHIS
LELTESAKEFVVEAGFDPLYGARPLKRYVQRQVETKLARELIAGVITDNSHVVVDVENNELVVRVK

Nucleotide

• Length: 2601 bp

>NTDB_id=345356 EXW35_RS05935 WP_215550872.1 1175513..1178113(+) (clpC) [Bacillus mycoides strain BPN09/1]
ATGGACTTAAATCAAATGACAACGAAAACACAGGAAGCGATTATGAGTGCTCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTAGATACTGTTCATCTATTGCTTACGTTATTAGAGCAGCAAGACGGATTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAGCAAGGTGTAGAAAGTTTAATTAAGAAAAAGCCTTCTGTAACTGGAAGCGGGGCAGAG
GCAGGGAAATTATATGTAACAGGTGCTTTGCAACAACTGCTTGTAAGAGCAGGAAAAGAAGCGGAGAAATTGCGAGATGA
CTACATTTCAATCGAACATGTATTACTTGCTTTTTCTGAAGAAAAAGGCGATATAAATCAATTATTCGCAAAATTTTATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCTGAAGTAAGAGCGGGGAAAATTGATCCTGTAATTGGCAGAGA
TAGTGAAATTCGCCGCGTGATCCGCATTCTTTCACGCAAAACGAAAAATAACCCCGTTTTAATCGGAGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGATTAGCGCAGCGTATTGTGAAAAAAGATGTCCCAGAAGGATTAAAAGATAGAACAATT
TTCGCTTTAGATATGAGTGCACTTGTGGCCGGAGCAAAATTCCGCGGTGAGTTTGAAGAACGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGTCGCATTTTATTATTCATTGATGAACTTCATACAATCGTCGGCGCTGGTAAAACAGAAG
GAGCGATGGATGCGGGAAATATGTTAAAACCAATGCTAGCGCGTGGTGAACTGCATTGTATCGGGGCAACGACATTAGAT
GAATACCGTAAATATATTGAGAAAGATCCAGCGTTAGAAAGACGTTTCCAACAAGTGTTAGCAGAAGAGCCAACTGTTGA
GGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGATCGCGCGATTG
TAGCGGCATCTGTTTTATCAGATCGATATATTTCGGATCGTTTCTTGCCCGATAAAGCAATTGATCTTGTTGATGAAGCT
TGTGCAACAATTCGAACAGAAATTGATTCTATGCCAACAGAACTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCTGCTCTTGGGAAAGAAAAGGACTTAGGTAGTCAAGAGCGCCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTAGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGACATTCATAAAGTGCGTGACTTACGTGAA
CATTTAGAGCGCTTGCGCCGTGAGTTAGAAGAAGCAGAAGGAAATTACGATTTAAATAAAGCAGCTGAGCTTCGCCACGG
GAAAATTCCAGCTATCGAAAAAGAGTTAAAAGAAGCGGAAGAGATGGGTGCACATAATAAACAAGAGAATCGTTTATTAC
GCGAGGAAGTAAGTGAAGAAGAAATTGCAGACATTGTTTCAAGGTGGACTGGTATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGTGAGAAATTATTACGTCTTGAACAAATTTTATCAGAGCGTGTTATCGGTCAAGAGGAAGCGGTAAGCCTTGTATC
AGACGCAGTACTTCGTGCTCGCGCTGGTATTAAAGATCCGAATCGTCCAATTGGTTCATTTATTTTCTTAGGCCCTACAG
GTGTTGGTAAAACTGAGCTTGCAAAAACGTTAGCGCAAACATTATTTGACAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTATATGGAGAAACACGCGGTGTCACGCTTAATTGGAGCGCCTCCTGGATATGTTGGATATGAAGAAGGTGGTCA
ATTAACAGAAGCAGTAAGACGTAAACCGTATTCTGTTATTTTGTTAGATGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGACGATGGCCGTATTACAGATTCACAAGGACGTACAGTAGACTTTAAAAATACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCACTTATTAGAAGGGCTAGAAGAAGATGGTTCTATTAAAGAAGAGTCAAGAGA
ACTTGTAATGGGACAATTAAGAGGACATTTCCGACCAGAATTCTTAAACCGTGTCGATGAAATTATTTTATTCAAACCTC
TTACAAGGAATGAAATTAAAGGTATTGTTGATAAGATTGTACAAGAATTACAAGGGCGTTTAGCAGATCGCCACATATCA
TTAGAATTGACGGAATCTGCAAAAGAATTTGTTGTAGAAGCTGGATTCGATCCGCTGTACGGAGCTCGTCCGTTAAAACG
ATACGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGAGTGATTACTGACAATAGTCACGTAGTGG
TTGATGTAGAAAATAACGAATTAGTCGTGCGCGTGAAGTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.434	100	0.48
clpC	Lactococcus lactis subsp. cremoris KW2	47.265	82.333	0.389