Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HIB_RS03790 Genome accession   NC_016809
Coordinates   731404..732057 (+) Length   217 a.a.
NCBI ID   WP_080006072.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 726404..737057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS03765 (HIB_07230) - 726874..727878 (-) 1005 WP_015701755.1 ornithine carbamoyltransferase -
  HIB_RS03770 (HIB_07240) - 728281..729099 (+) 819 WP_015701756.1 Cof-type HAD-IIB family hydrolase -
  HIB_RS03775 (HIB_07250) crcB 729099..729485 (+) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  HIB_RS03780 (HIB_07260) recX 729482..729940 (-) 459 WP_041175045.1 recombination regulator RecX -
  HIB_RS03785 (HIB_07270) recA 730020..731084 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  HIB_RS03790 (HIB_07280) sxy/tfoX 731404..732057 (+) 654 WP_080006072.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25015.36 Da        Isoelectric Point: 10.0305

>NTDB_id=34532 HIB_RS03790 WP_080006072.1 731404..732057(+) (sxy/tfoX) [Haemophilus influenzae 10810]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLNGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=34532 HIB_RS03790 WP_080006072.1 731404..732057(+) (sxy/tfoX) [Haemophilus influenzae 10810]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGCGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAACGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.618

100

0.986

Multiple sequence alignment