Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GFM36_RS11155 Genome accession   NZ_CP045645
Coordinates   2325892..2326998 (-) Length   368 a.a.
NCBI ID   WP_020753209.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2320892..2331998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFM36_RS11125 (GFM36_11190) cydB 2322040..2323185 (+) 1146 WP_000575163.1 cytochrome d ubiquinol oxidase subunit II -
  GFM36_RS11130 (GFM36_11195) cydX 2323199..2323300 (+) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  GFM36_RS11135 (GFM36_11200) - 2323301..2323600 (+) 300 WP_085916945.1 cyd operon YbgE family protein -
  GFM36_RS11140 (GFM36_11205) - 2323613..2324137 (-) 525 WP_000593796.1 GNAT family N-acetyltransferase -
  GFM36_RS11145 (GFM36_11210) - 2324210..2324881 (-) 672 WP_000175351.1 DUF2057 domain-containing protein -
  GFM36_RS11150 (GFM36_11215) - 2325107..2325703 (-) 597 WP_000102943.1 nitroreductase family protein -
  GFM36_RS11155 (GFM36_11220) pilA 2325892..2326998 (-) 1107 WP_020753209.1 signal recognition particle-docking protein FtsY Machinery gene
  GFM36_RS11160 (GFM36_11225) - 2327106..2327432 (-) 327 WP_000955083.1 hypothetical protein -
  GFM36_RS11165 (GFM36_11230) - 2327533..2327892 (-) 360 WP_000185571.1 hypothetical protein -
  GFM36_RS11170 (GFM36_11235) - 2328108..2328341 (+) 234 WP_000616034.1 hypothetical protein -
  GFM36_RS11175 (GFM36_11240) - 2328777..2329151 (+) 375 WP_001087274.1 DUF2750 domain-containing protein -
  GFM36_RS11180 (GFM36_11245) - 2329292..2329723 (+) 432 WP_000156920.1 CBS domain-containing protein -
  GFM36_RS11185 (GFM36_11250) - 2329774..2330982 (-) 1209 WP_000129938.1 aspartate aminotransferase family protein -
  GFM36_RS11190 (GFM36_11255) grxD 2331210..2331551 (+) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  GFM36_RS11195 (GFM36_11260) - 2331598..2331921 (-) 324 WP_000121851.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39935.76 Da        Isoelectric Point: 4.9872

>NTDB_id=345317 GFM36_RS11155 WP_020753209.1 2325892..2326998(-) (pilA) [Acinetobacter baumannii strain XH1056]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDL
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=345317 GFM36_RS11155 WP_020753209.1 2325892..2326998(-) (pilA) [Acinetobacter baumannii strain XH1056]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTTGTCGAGGCTGCACCGT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGGCGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
CGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCTT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGACAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTTGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGCGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451