Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW30_RS09570 Genome accession   NZ_CP035962
Coordinates   1860956..1861243 (+) Length   95 a.a.
NCBI ID   WP_002148618.1    Uniprot ID   J8DCP1
Organism   Bacillus mycoides strain BPN07/3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1861329..1862069 1860956..1861243 flank 86


Gene organization within MGE regions


Location: 1860956..1862069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW30_RS09570 (EXW30_09730) abrB 1860956..1861243 (+) 288 WP_002148618.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10621.33 Da        Isoelectric Point: 5.1423

>NTDB_id=345315 EXW30_RS09570 WP_002148618.1 1860956..1861243(+) (abrB) [Bacillus mycoides strain BPN07/3]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGSITVSIEGAK
HVIKEIEQFLNKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=345315 EXW30_RS09570 WP_002148618.1 1860956..1861243(+) (abrB) [Bacillus mycoides strain BPN07/3]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATTAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAGCATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8DCP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.778

94.737

0.547

Multiple sequence alignment