Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW30_RS07615 Genome accession   NZ_CP035962
Coordinates   1465257..1465859 (-) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus mycoides strain BPN07/3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1460257..1470859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW30_RS07595 (EXW30_07725) dnaD 1460563..1461270 (+) 708 WP_078181042.1 DNA replication protein DnaD -
  EXW30_RS07600 (EXW30_07730) nth 1461286..1461933 (+) 648 WP_002158563.1 endonuclease III -
  EXW30_RS07605 (EXW30_07735) - 1461937..1462455 (+) 519 WP_078181041.1 YpoC family protein -
  EXW30_RS07610 (EXW30_07740) - 1462476..1465190 (-) 2715 WP_215570067.1 PBP1A family penicillin-binding protein -
  EXW30_RS07615 (EXW30_07745) recU 1465257..1465859 (-) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  EXW30_RS07620 (EXW30_07750) - 1465963..1466988 (+) 1026 WP_215570069.1 DUF2515 domain-containing protein -
  EXW30_RS29640 - 1467329..1467475 (-) 147 WP_306292139.1 phage portal protein -
  EXW30_RS07625 (EXW30_07755) - 1467594..1467836 (+) 243 WP_002158558.1 hypothetical protein -
  EXW30_RS07630 (EXW30_07760) - 1467852..1468196 (+) 345 WP_016104342.1 YppE family protein -
  EXW30_RS07635 (EXW30_07765) - 1468222..1468413 (-) 192 WP_002030817.1 YppF family protein -
  EXW30_RS07640 (EXW30_07770) - 1468591..1469301 (+) 711 WP_215570071.1 YppG family protein -
  EXW30_RS07645 (EXW30_07775) - 1469458..1469895 (+) 438 WP_016104344.1 CotD family spore coat protein -
  EXW30_RS07650 (EXW30_07780) - 1469952..1470506 (+) 555 WP_078181038.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=345314 EXW30_RS07615 WP_000155584.1 1465257..1465859(-) (recU) [Bacillus mycoides strain BPN07/3]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345314 EXW30_RS07615 WP_000155584.1 1465257..1465859(-) (recU) [Bacillus mycoides strain BPN07/3]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCCCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATATATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment