Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GFM36_RS09715 Genome accession   NZ_CP045645
Coordinates   2017015..2017611 (+) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain XH1056     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2012015..2022611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFM36_RS09685 (GFM36_09740) - 2012193..2012567 (+) 375 WP_000800035.1 TonB C-terminal domain-containing protein -
  GFM36_RS09690 (GFM36_09745) - 2012742..2013509 (+) 768 WP_000934173.1 class I SAM-dependent methyltransferase -
  GFM36_RS09695 (GFM36_09750) - 2013590..2014675 (-) 1086 WP_000825830.1 alpha/beta fold hydrolase -
  GFM36_RS09700 (GFM36_09755) - 2014809..2015996 (+) 1188 WP_038346643.1 O-succinylhomoserine sulfhydrylase -
  GFM36_RS09705 (GFM36_09760) - 2016174..2016410 (+) 237 WP_000917295.1 hypothetical protein -
  GFM36_RS09710 (GFM36_09765) - 2016676..2017005 (+) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  GFM36_RS09715 (GFM36_09770) recR 2017015..2017611 (+) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  GFM36_RS09720 (GFM36_09775) - 2017915..2018751 (+) 837 Protein_1892 HRDC domain-containing protein -
  GFM36_RS09725 (GFM36_09780) - 2018863..2019830 (+) 968 Protein_1893 IS30 family transposase -
  GFM36_RS09730 (GFM36_09785) - 2019838..2020128 (+) 291 Protein_1894 ribonuclease D -
  GFM36_RS09735 (GFM36_09790) - 2020631..2020898 (+) 268 Protein_1895 hypothetical protein -
  GFM36_RS09740 (GFM36_09795) - 2021029..2021370 (+) 342 WP_000367441.1 hypothetical protein -
  GFM36_RS09745 (GFM36_09800) - 2021442..2021606 (-) 165 WP_000086294.1 hypothetical protein -
  GFM36_RS09750 (GFM36_09805) - 2022094..2022354 (+) 261 WP_188146221.1 YcgL domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=345314 GFM36_RS09715 WP_000490551.1 2017015..2017611(+) (recR) [Acinetobacter baumannii strain XH1056]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=345314 GFM36_RS09715 WP_000490551.1 2017015..2017611(+) (recR) [Acinetobacter baumannii strain XH1056]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGTCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTGCCACAAGGTGGTGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment