Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GFM36_RS09125 Genome accession   NZ_CP045645
Coordinates   1897455..1898090 (+) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH1056     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892455..1903090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFM36_RS09100 (GFM36_09150) - 1893295..1894308 (+) 1014 WP_020753085.1 phosphotransferase -
  GFM36_RS09105 (GFM36_09155) murU 1894308..1894997 (+) 690 WP_000646456.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GFM36_RS09110 (GFM36_09160) rsmG 1895085..1895717 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GFM36_RS09115 (GFM36_09165) - 1895739..1896521 (+) 783 WP_000057212.1 ParA family protein -
  GFM36_RS09120 (GFM36_09170) - 1896518..1897405 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  GFM36_RS09125 (GFM36_09175) exbB 1897455..1898090 (+) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GFM36_RS09130 (GFM36_09180) - 1898106..1898534 (+) 429 WP_000669683.1 biopolymer transporter ExbD -
  GFM36_RS09135 (GFM36_09185) msbA 1898531..1900258 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  GFM36_RS09140 (GFM36_09190) lpxK 1900261..1901271 (+) 1011 WP_020753086.1 tetraacyldisaccharide 4'-kinase -
  GFM36_RS09145 (GFM36_09195) kdsB 1901281..1902042 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GFM36_RS09150 (GFM36_09200) - 1902054..1903034 (+) 981 WP_038346636.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=345309 GFM36_RS09125 WP_000264035.1 1897455..1898090(+) (exbB) [Acinetobacter baumannii strain XH1056]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=345309 GFM36_RS09125 WP_000264035.1 1897455..1898090(+) (exbB) [Acinetobacter baumannii strain XH1056]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393