Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   GFB63_RS11180 Genome accession   NZ_CP045596
Coordinates   1670451..1670690 (+) Length   79 a.a.
NCBI ID   WP_409350141.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665451..1675690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS08550 (GFB63_08780) - 1665916..1666488 (-) 573 WP_002948204.1 ECF transporter S component -
  GFB63_RS08555 (GFB63_08785) coaC 1666516..1667061 (-) 546 WP_002950459.1 phosphopantothenoylcysteine decarboxylase -
  GFB63_RS08560 (GFB63_08790) - 1667054..1667737 (-) 684 WP_084828741.1 phosphopantothenate--cysteine ligase -
  GFB63_RS08565 (GFB63_08795) - 1667931..1669601 (+) 1671 WP_024704082.1 formate--tetrahydrofolate ligase -
  GFB63_RS08570 (GFB63_08800) ciaR 1669787..1670461 (+) 675 WP_084828742.1 response regulator transcription factor Regulator
  GFB63_RS11180 (GFB63_08805) ciaH 1670451..1670690 (+) 240 WP_409350141.1 histidine kinase Regulator
  GFB63_RS10755 (GFB63_08815) - 1670835..1671871 (+) 1037 Protein_1656 sensor histidine kinase -
  GFB63_RS08590 (GFB63_08820) rpsT 1672220..1672456 (-) 237 WP_084825632.1 30S ribosomal protein S20 -
  GFB63_RS08595 (GFB63_08825) coaA 1672525..1673445 (-) 921 WP_023909573.1 type I pantothenate kinase -
  GFB63_RS08600 (GFB63_08830) - 1673768..1674358 (+) 591 WP_193838248.1 class I SAM-dependent methyltransferase -
  GFB63_RS08605 (GFB63_08845) - 1674355..1675630 (+) 1276 Protein_1660 pyrimidine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 9386.03 Da        Isoelectric Point: 8.4544

>NTDB_id=345276 GFB63_RS11180 WP_409350141.1 1670451..1670690(+) (ciaH) [Streptococcus thermophilus strain TK-P3A]
MLTEFFNYLFRRIKSDGFKFFIHFFATFSGIFLIMTVMILQILSYGVYSNVDSSLKAAVTKTNSYLEMEMLKREFFSDF

Nucleotide


Download         Length: 240 bp        

>NTDB_id=345276 GFB63_RS11180 WP_409350141.1 1670451..1670690(+) (ciaH) [Streptococcus thermophilus strain TK-P3A]
ATGCTGACTGAATTTTTCAATTATCTTTTCAGGAGAATCAAGTCAGACGGCTTTAAGTTCTTCATCCATTTCTTTGCAAC
TTTTTCTGGTATTTTCCTTATCATGACTGTTATGATATTGCAGATTCTCAGTTATGGAGTTTATTCCAATGTTGACTCTA
GTCTGAAAGCAGCAGTAACTAAGACCAATTCTTATTTGGAAATGGAAATGCTAAAACGCGAATTTTTTTCTGACTTCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

48.387

78.481

0.38

Multiple sequence alignment