Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GFB63_RS09650 Genome accession   NZ_CP045596
Coordinates   1868915..1869985 (+) Length   356 a.a.
NCBI ID   WP_100262476.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863915..1874985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS09630 (GFB63_09880) glgP 1864063..1866327 (+) 2265 WP_014608303.1 glycogen/starch/alpha-glucan family phosphorylase -
  GFB63_RS09635 (GFB63_09885) - 1866433..1866873 (-) 441 WP_223899653.1 hypothetical protein -
  GFB63_RS10800 - 1866985..1867233 (-) 249 WP_228024387.1 hypothetical protein -
  GFB63_RS09645 (GFB63_09895) - 1867701..1868690 (+) 990 WP_111679598.1 lipoate--protein ligase -
  GFB63_RS09650 (GFB63_09900) xerS 1868915..1869985 (+) 1071 WP_100262476.1 tyrosine recombinase XerS Machinery gene
  GFB63_RS09655 (GFB63_09905) - 1870136..1872676 (-) 2541 WP_193838290.1 M1 family metallopeptidase -
  GFB63_RS09660 (GFB63_09910) phoU 1872810..1873463 (-) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  GFB63_RS09665 (GFB63_09915) pstB 1873491..1874249 (-) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41501.63 Da        Isoelectric Point: 9.6822

>NTDB_id=345269 GFB63_RS09650 WP_100262476.1 1868915..1869985(+) (xerS) [Streptococcus thermophilus strain TK-P3A]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLAVPYSFTTLYEYLKEYKRFFNWLIDSGISDTDDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=345269 GFB63_RS09650 WP_100262476.1 1868915..1869985(+) (xerS) [Streptococcus thermophilus strain TK-P3A]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTAGCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATACTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACTATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCA
GTTAATGTGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829