Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EXN22_RS05035 Genome accession   NZ_CP035952
Coordinates   1115757..1117124 (+) Length   455 a.a.
NCBI ID   WP_130263033.1    Uniprot ID   A0A411ME13
Organism   Pseudomonas tructae strain SNU WT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1110757..1122124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN22_RS05005 (EXN22_05005) cydB 1110824..1111831 (+) 1008 WP_130263027.1 cytochrome d ubiquinol oxidase subunit II -
  EXN22_RS05010 (EXN22_05010) - 1111844..1111999 (+) 156 WP_130263028.1 DUF2474 domain-containing protein -
  EXN22_RS05015 (EXN22_05015) - 1112142..1113266 (-) 1125 WP_130263029.1 methyltransferase -
  EXN22_RS05020 (EXN22_05020) - 1113357..1114058 (-) 702 WP_130263030.1 LuxR family transcriptional regulator -
  EXN22_RS05025 (EXN22_05025) - 1114345..1115121 (+) 777 WP_130263031.1 ferredoxin--NADP reductase -
  EXN22_RS05030 (EXN22_05030) mscL 1115169..1115582 (-) 414 WP_130263032.1 large-conductance mechanosensitive channel protein MscL -
  EXN22_RS05035 (EXN22_05035) radA 1115757..1117124 (+) 1368 WP_130263033.1 DNA repair protein RadA Machinery gene
  EXN22_RS05040 (EXN22_05040) - 1117288..1118730 (+) 1443 WP_407691944.1 TolC family outer membrane protein -
  EXN22_RS05045 (EXN22_05045) - 1118810..1120948 (+) 2139 WP_165392184.1 type I secretion system permease/ATPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48675.18 Da        Isoelectric Point: 7.0801

>NTDB_id=345232 EXN22_RS05035 WP_130263033.1 1115757..1117124(+) (radA) [Pseudomonas tructae strain SNU WT1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFTTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRPLDNGLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=345232 EXN22_RS05035 WP_130263033.1 1115757..1117124(+) (radA) [Pseudomonas tructae strain SNU WT1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTCCCGAAATGGGCCGGGCAATGCGGTGAATG
CGGCGCCTGGAACACCCTGGTCGAGACCGTGCTGGAAAGCGGTGCGGCAGCAGCCCCCAGTGGGCGCACCGGTTGGGCCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTCACCACCGCCAGTGCCGAGCTC
GACCGGGTCCTGGGCGGTGGCCTGGTCGACGGTTCGGTGGTATTGATCGGTGGCGACCCGGGCATCGGCAAGTCGACCAT
CCTCCTGCAGACCTTGTGCAACATCGCCACGCGCATGCCGGCGTTGTACGTCACCGGCGAAGAATCCCAGCAGCAGGTGG
CCATGCGTGCCCGGCGTCTGGGCCTGCCCCAGGACAAGCTGCGGGTCATGACCGAGACCTGCATCGAGACCATTATCGCC
ACTGCCCGGGTCGAAAAGCCCAAGGTCATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCAGCGCC
CGGTGGGGTTTCCCAGGTGCGCGAAAGTGCGGCCTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTGACCAAGGAAGGTGCCCTGGCCGGGCCACGGGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGGCGCCTGCGTTTGCTACGCGCGGTGAAAAACCGCTTTGGCGCGGTCAACGAGTTAGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCTTCAGCGATCTTTCTCACGCGTGCCCAGGAAGAGGTCCCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTCGAGGTCCAGGCGCTGGTCGACGACAGCCACTTGTCC
AACCCGCGGCGGGTCACCCTGGGCCTGGATCAGAATCGCCTGGCCATGCTCCTGGCGGTGCTGCACCGCCATGGTGGCAT
TCCAACCCATGATCAGGACGTGTTCCTCAACGTGGTTGGCGGGGTCAAGGTCCTGGAGACCGCCTCGGACCTGGCGTTGA
TGGCAGCGATCATGTCCAGCCTGCGCAACCGCCCGCTCGATAACGGCCTGCTGGTGTTTGGCGAGGTCGGTTTGTCGGGC
GAAGTGCGGCCGGTGCCCAGTGGCCAGGAGCGTTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGTGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAGGCCCCGGCCGGCTTGCAGGTAATTGCCGTGACTCGCCTGGAACAGGCATTGGATGCCCTGT
TCGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411ME13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.623

100

0.47
  radA Streptococcus pneumoniae D39

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.47
  radA Streptococcus pneumoniae R6

46.623

100

0.47
  radA Streptococcus mitis NCTC 12261

46.405

100

0.468
  radA Streptococcus mitis SK321

46.593

100

0.466

Multiple sequence alignment