Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GFB63_RS00215 Genome accession   NZ_CP045596
Coordinates   41240..43450 (-) Length   736 a.a.
NCBI ID   WP_193838307.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36240..48450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS10300 - 37196..37729 (-) 534 WP_223899692.1 hypothetical protein -
  GFB63_RS00195 (GFB63_00205) nth 38077..38721 (-) 645 WP_193838306.1 endonuclease III -
  GFB63_RS00200 (GFB63_00210) - 38721..39419 (-) 699 WP_100262521.1 DnaD domain-containing protein -
  GFB63_RS00205 (GFB63_00215) metA 39491..40435 (-) 945 WP_100262522.1 homoserine O-succinyltransferase -
  GFB63_RS00210 (GFB63_00220) - 40607..41125 (-) 519 WP_002947203.1 adenine phosphoribosyltransferase -
  GFB63_RS00215 (GFB63_00225) recJ 41240..43450 (-) 2211 WP_193838307.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GFB63_RS00220 (GFB63_00230) - 43463..44230 (-) 768 WP_100273206.1 SDR family oxidoreductase -
  GFB63_RS00225 (GFB63_00235) rnz 44230..45159 (-) 930 WP_193838308.1 ribonuclease Z -
  GFB63_RS00230 (GFB63_00240) - 45191..45832 (-) 642 WP_100262525.1 cystathionine beta-lyase -
  GFB63_RS00235 (GFB63_00245) hflX 45825..47063 (-) 1239 WP_084828878.1 GTPase HflX -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82639.06 Da        Isoelectric Point: 4.4120

>NTDB_id=345168 GFB63_RS00215 WP_193838307.1 41240..43450(-) (recJ) [Streptococcus thermophilus strain TK-P3A]
MITSTYDWKINTKEPDAGFFKLAKEHGLAKTAAKIAYERGIRTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIITVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPSQLPEAYAIVHPEHPGADYPFKYLAGCGVAFKIAMALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISEVDLTTISEETVAFKLAPQLNALGRLDDPNPAIELLTGFDDEETQAIALEINAKN
EERKEVVQNIFDEAMSMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLTQLSDILCSYVYDNDIDTSAKNTLNLDEELQLGELGLDTIRSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKASFDVVAFNKGHLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLADVRVD
NVQLFDFRSKNMVLPEGLPTVEEASDEATAVVLDTLPNSETELKEWFDGKEFQAIYFKNRIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELGFVTIDNGVMTVNKEAGKRDIEESKIFQDLKHLVKFQELMA
LGTPQEIYDWLYKQEQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=345168 GFB63_RS00215 WP_193838307.1 41240..43450(-) (recJ) [Streptococcus thermophilus strain TK-P3A]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCTAAAGAACATGG
ACTGGCAAAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTAGGACAGAAGAGGCACTTGAAGACTTTCTAAAGGCAG
ATTTATCGCACCTTCATGATCCTTATCTGCTTCATGATATGGATAAGGCAGTGGCTAGAATCCGTCAGGCTATTGAAAAT
TATGAACAAATCTTAGTATATGGAGATTACGATGCGGATGGTATGACGTCAGCCTCGATTGTCAAAGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTATACTTGCCAAACCGTTTTACAGATGGTTATGGACCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGTATTTCACTCATCATTACAGTGGATAATGGGGTAGCTGGGAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGATGTTATCGTCACAGACCACCATAGCATGCCGTCACAGCTTCCAGAAGCTTATGCCATTGTTCATCC
AGAACATCCAGGTGCTGATTATCCCTTTAAGTATTTGGCAGGTTGTGGAGTAGCTTTCAAAATAGCAATGGCCCTCCTCG
AGACCATACCAACAGAGATGTTGGATTTGGTAGCTATAGGGACTATTGCTGATATGGTTAGCCTGACCGATGAAAATCGT
ATTATGGTTAAGGTTGGACTTGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGTATTTCCGAAGT
AGACCTAACAACAATTTCTGAAGAAACAGTGGCTTTCAAACTAGCCCCTCAACTCAATGCCTTAGGACGTTTAGACGATC
CAAACCCAGCTATTGAACTATTAACCGGATTTGACGATGAGGAAACGCAAGCCATTGCTCTGGAAATCAATGCCAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATGAGCATGGTAGACTTGGATAAACCAGTTCAGGTTTT
GGCTAAGGAAGGCTGGCATCCTGGTGTACTCGGCATTGTTGCTGGCCGCATCATGGAGCAAATCAGTCAGACAGTAGTGG
TTTTAAATATTGAAGATGGCTTGGCTAAGGGATCAGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCACTTGATGAC
CACAGAGACATCTTTACTGCATTTGGAGGGCACGCTGGAGCAGCTGGTATGACCCTTCCAGAGGAAAATCTTACTCAACT
CTCAGATATTTTATGTAGTTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TACAACTCGGTGAGCTTGGCTTGGATACCATAAGGAGCCTCGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGAACTATGGGGCAAAATGGAGCTCATCTTAAGTTTAAGGTTAA
GCAAGGCAAGGCTAGTTTTGATGTTGTCGCCTTTAACAAAGGGCATCTGCTTCAAGAATTTCAGCAAGCTCAGGGGTTGG
AATTAGCAGTGACGCTGTCCGTTAATGTATGGAATGGCCAGACAACACTACAGCTCATGTTGGCAGATGTGCGCGTGGAC
AATGTTCAGTTATTTGATTTTCGCTCAAAAAATATGGTACTACCTGAGGGCCTACCAACTGTAGAAGAGGCCTCAGACGA
AGCAACTGCAGTTGTCCTCGACACCCTACCGAATTCAGAGACGGAATTAAAAGAGTGGTTTGACGGTAAGGAATTCCAGG
CCATTTATTTTAAGAATCGCATTAAGGAAGCCTATTATCTGACAGGCTATGGAACTAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTTGATGTGCGCTATAAATTAGATGACCTCAGTCATTATCTTAAGATTGATAAAAT
TCTTCTCATCAAGATGATTCAAATTTTTGATGAATTGGGCTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGGAAAACGTGATATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACATCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAAGCAGGAGCAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

DHHA1 domain (DHHA1)

(317-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

66.757

100

0.671
  recJ Bacillus subtilis subsp. subtilis str. 168

37.292

100

0.397