Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   C9E88_RS02565 Genome accession   NZ_CP035934
Coordinates   537097..537975 (+) Length   292 a.a.
NCBI ID   WP_106984074.1    Uniprot ID   A0A7Y8Q096
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532097..542975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS02535 (C9E88_001735) - 532738..532929 (+) 192 WP_106984068.1 hypothetical protein -
  C9E88_RS02540 (C9E88_001730) - 532971..533360 (-) 390 WP_106984069.1 hypothetical protein -
  C9E88_RS02545 (C9E88_001725) - 533609..534583 (+) 975 WP_106984070.1 aliphatic sulfonate ABC transporter substrate-binding protein -
  C9E88_RS02550 (C9E88_001720) - 534635..535210 (-) 576 WP_106984071.1 xanthine phosphoribosyltransferase -
  C9E88_RS02555 (C9E88_001715) - 535300..536013 (-) 714 WP_106984072.1 DUF3108 domain-containing protein -
  C9E88_RS02560 (C9E88_001710) - 536165..536848 (-) 684 WP_106984073.1 hypothetical protein -
  C9E88_RS02565 (C9E88_001705) tonB2 537097..537975 (+) 879 WP_106984074.1 TonB family protein Machinery gene
  C9E88_RS02570 (C9E88_001700) - 538019..538474 (+) 456 WP_106984075.1 hypothetical protein -
  C9E88_RS02575 (C9E88_001695) - 538434..538742 (-) 309 WP_106984076.1 antibiotic biosynthesis monooxygenase -
  C9E88_RS02580 (C9E88_001690) ybeY 538847..539329 (-) 483 WP_106984077.1 rRNA maturation RNase YbeY -
  C9E88_RS02585 (C9E88_001685) - 539339..540424 (-) 1086 WP_106984078.1 PhoH family protein -
  C9E88_RS02590 (C9E88_001680) miaB 540462..541919 (-) 1458 WP_106984079.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33182.52 Da        Isoelectric Point: 6.8938

>NTDB_id=345153 C9E88_RS02565 WP_106984074.1 537097..537975(+) (tonB2) [Acinetobacter cumulans strain WCHAc060092]
MLKKKTFKPLQNEWWKDPIFVSAFTAAAVLHISVLMVQFGVPQATFETTKEIAVSLRPSDTTVEDADYLAQADQQGSGKF
REKHRMSTDMPAPMVDQDSGEQAQQALDKIQQKRELNFEEKVLMTTLSWQKQADENQRKKQAEELQSQFSAKAAMVASIE
AQYLQRQQNFSRQQKIKTIDGVQAKQDDTAAYMEKFRQKVEFYGNQNYPDQARAQNLAGEVQLMVILNSSGGIRAIRLLE
SSGHPVLDEAAKASVRKAAPFAHFDSKMKDISELRVVRTWRFDPAEAEFEVN

Nucleotide


Download         Length: 879 bp        

>NTDB_id=345153 C9E88_RS02565 WP_106984074.1 537097..537975(+) (tonB2) [Acinetobacter cumulans strain WCHAc060092]
ATGCTGAAGAAAAAGACATTCAAACCGTTGCAAAATGAGTGGTGGAAAGATCCAATATTTGTCAGTGCATTTACTGCTGC
TGCGGTGTTGCATATCTCGGTGTTAATGGTGCAATTTGGTGTGCCACAAGCAACATTTGAAACCACTAAAGAAATTGCTG
TAAGCCTACGGCCTAGTGATACGACTGTGGAAGATGCGGATTATCTTGCGCAAGCCGATCAACAAGGCTCAGGTAAGTTT
CGCGAGAAGCACCGCATGTCGACCGACATGCCTGCACCCATGGTTGATCAGGACAGTGGCGAGCAAGCACAGCAAGCATT
AGATAAAATTCAGCAAAAGCGTGAACTGAACTTTGAAGAAAAAGTGCTGATGACCACGCTCAGTTGGCAAAAACAGGCCG
ATGAGAATCAACGTAAAAAGCAAGCTGAAGAATTGCAAAGCCAGTTTTCTGCCAAAGCAGCGATGGTGGCCAGTATTGAA
GCGCAATATTTACAACGCCAGCAAAACTTTAGTCGTCAGCAAAAAATTAAAACCATTGATGGTGTGCAAGCCAAGCAAGA
TGATACAGCTGCGTATATGGAAAAATTCCGCCAAAAAGTAGAATTTTATGGCAACCAAAACTATCCAGATCAGGCGCGTG
CACAAAATTTAGCTGGTGAAGTGCAATTGATGGTGATTTTAAATTCCAGTGGGGGGATCCGTGCAATTCGTTTACTGGAA
AGTTCTGGGCATCCTGTTTTAGACGAAGCGGCTAAAGCATCAGTACGTAAAGCTGCACCATTTGCTCATTTCGATTCTAA
AATGAAAGACATCTCTGAACTTCGTGTTGTGCGAACATGGCGTTTTGACCCAGCAGAAGCAGAATTTGAAGTGAATTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8Q096

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

66.441

100

0.671

Multiple sequence alignment