Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | APAC_RS11620 | Genome accession | NZ_CP035928 |
| Coordinates | 2311877..2312266 (+) | Length | 129 a.a. |
| NCBI ID | WP_130234264.1 | Uniprot ID | A0A5C2HAI7 |
| Organism | Malaciobacter pacificus strain LMG 26638 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2306877..2317266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APAC_RS11600 (APAC_2305) | - | 2307774..2309132 (-) | 1359 | WP_130234260.1 | class II 3-deoxy-7-phosphoheptulonate synthase | - |
| APAC_RS11605 (APAC_2306) | - | 2309264..2310256 (-) | 993 | WP_130234261.1 | transaldolase | - |
| APAC_RS11610 (APAC_2307) | serB | 2310262..2310888 (-) | 627 | WP_130234262.1 | phosphoserine phosphatase SerB | - |
| APAC_RS11615 (APAC_2308) | - | 2310969..2311880 (+) | 912 | WP_130234263.1 | methylenetetrahydrofolate reductase | - |
| APAC_RS11620 (APAC_2309) | dprB | 2311877..2312266 (+) | 390 | WP_130234264.1 | Holliday junction resolvase RuvX | Machinery gene |
| APAC_RS11625 (APAC_2310) | acpS | 2312268..2312618 (-) | 351 | WP_130234265.1 | holo-ACP synthase | - |
| APAC_RS11630 (APAC_2311) | - | 2312648..2313607 (+) | 960 | WP_130234266.1 | ABC transporter permease | - |
| APAC_RS11635 (APAC_2312) | panC | 2313632..2314450 (+) | 819 | WP_130234267.1 | pantoate--beta-alanine ligase | - |
| APAC_RS11640 (APAC_2313) | rimO | 2314514..2315854 (+) | 1341 | WP_130234268.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| APAC_RS11645 (APAC_2314) | tilS | 2315857..2316837 (+) | 981 | WP_130234269.1 | tRNA lysidine(34) synthetase TilS | - |
| APAC_RS11650 (APAC_2315) | - | 2316826..2317095 (-) | 270 | WP_130234270.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14678.13 Da Isoelectric Point: 8.9997
>NTDB_id=345108 APAC_RS11620 WP_130234264.1 2311877..2312266(+) (dprB) [Malaciobacter pacificus strain LMG 26638]
MKLACIDVGLKRIGVAICLSSNIVTPQPAILRKNRNQASNDVNAFLKEWEIEKLIVGYPSASEDMQKRINHFIKLLELKI
PYELQEENLSSVEAEDMMKGEIKYKRDGRVDSLAAKIILERYLAKSSKN
MKLACIDVGLKRIGVAICLSSNIVTPQPAILRKNRNQASNDVNAFLKEWEIEKLIVGYPSASEDMQKRINHFIKLLELKI
PYELQEENLSSVEAEDMMKGEIKYKRDGRVDSLAAKIILERYLAKSSKN
Nucleotide
Download Length: 390 bp
>NTDB_id=345108 APAC_RS11620 WP_130234264.1 2311877..2312266(+) (dprB) [Malaciobacter pacificus strain LMG 26638]
TTGAAACTAGCCTGCATTGATGTTGGTCTAAAAAGAATCGGAGTTGCTATATGTTTAAGTTCAAACATAGTAACTCCACA
GCCTGCAATTTTAAGAAAAAATAGAAATCAAGCTTCAAATGATGTTAATGCTTTTTTAAAAGAGTGGGAGATAGAAAAAC
TAATAGTTGGATATCCAAGTGCTAGCGAAGATATGCAAAAAAGAATAAATCACTTTATAAAACTACTAGAACTAAAAATT
CCCTATGAACTTCAAGAAGAGAATCTAAGTTCAGTTGAAGCAGAAGATATGATGAAAGGTGAAATCAAATATAAAAGAGA
TGGAAGAGTTGATTCCCTTGCAGCTAAAATAATACTTGAGCGATACCTAGCAAAATCTTCAAAAAACTAA
TTGAAACTAGCCTGCATTGATGTTGGTCTAAAAAGAATCGGAGTTGCTATATGTTTAAGTTCAAACATAGTAACTCCACA
GCCTGCAATTTTAAGAAAAAATAGAAATCAAGCTTCAAATGATGTTAATGCTTTTTTAAAAGAGTGGGAGATAGAAAAAC
TAATAGTTGGATATCCAAGTGCTAGCGAAGATATGCAAAAAAGAATAAATCACTTTATAAAACTACTAGAACTAAAAATT
CCCTATGAACTTCAAGAAGAGAATCTAAGTTCAGTTGAAGCAGAAGATATGATGAAAGGTGAAATCAAATATAAAAGAGA
TGGAAGAGTTGATTCCCTTGCAGCTAAAATAATACTTGAGCGATACCTAGCAAAATCTTCAAAAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
49.63 |
100 |
0.519 |