Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   APAC_RS08445 Genome accession   NZ_CP035928
Coordinates   1686781..1688130 (+) Length   449 a.a.
NCBI ID   WP_130233692.1    Uniprot ID   A0A5C2H748
Organism   Malaciobacter pacificus strain LMG 26638     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1681781..1693130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APAC_RS08430 (APAC_1668) - 1681851..1683215 (+) 1365 WP_130232179.1 transposase -
  APAC_RS08435 (APAC_1669) - 1683212..1685833 (-) 2622 WP_130233690.1 DEAD/DEAH box helicase family protein -
  APAC_RS08440 (APAC_1670) - 1685917..1686147 (+) 231 WP_130233691.1 hypothetical protein -
  APAC_RS08445 (APAC_1671) radA 1686781..1688130 (+) 1350 WP_130233692.1 DNA repair protein RadA Machinery gene
  APAC_RS08450 (APAC_1672) - 1688137..1688544 (-) 408 WP_130233693.1 thioesterase family protein -
  APAC_RS08455 (APAC_1673) ybeY 1688659..1689078 (+) 420 WP_130233694.1 rRNA maturation RNase YbeY -
  APAC_RS08460 (APAC_1674) - 1689081..1689998 (+) 918 WP_130233695.1 calcium/sodium antiporter -
  APAC_RS08465 (APAC_1675) - 1690025..1690426 (-) 402 WP_130233696.1 Fur family transcriptional regulator -
  APAC_RS08470 (APAC_1676) - 1690684..1691346 (+) 663 WP_130233697.1 ferritin family protein -
  APAC_RS08475 (APAC_1677) - 1691408..1692061 (+) 654 WP_130233698.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49104.48 Da        Isoelectric Point: 6.6524

>NTDB_id=345104 APAC_RS08445 WP_130233692.1 1686781..1688130(+) (radA) [Malaciobacter pacificus strain LMG 26638]
MAKKKSSLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQDQQEVLKQTAKVVNTTSKATPITQIKQDDVTRFSSHNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIASSGKKVLYVSGEESAGQIKLRANRLEANNDNMYLLSEIKLEEIQD
ELLRQDYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKDSDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASKELRMLRGFKNRFGSTSEIGIFEMSAEGLISAKDIASKFFDKSKAQAGSALTVSMKGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNHYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSLDLRLKEAQAQGIKKAVIAQKPSLKLDIKTFAVDEVPKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=345104 APAC_RS08445 WP_130233692.1 1686781..1688130(+) (radA) [Malaciobacter pacificus strain LMG 26638]
ATGGCTAAGAAAAAATCATCACTTTTTGAGTGTCAACATTGTGGAGAACAAAGTACAAAATGGCTAGGTAAATGTCCAAA
TTGTGGTTCATGGGATAGTTTTATTGAACTAAACCAAGACCAACAAGAAGTACTAAAACAAACTGCAAAGGTAGTAAATA
CTACTTCAAAAGCTACTCCAATCACTCAAATAAAACAAGATGATGTTACAAGATTTTCTTCACACAATGATGAGTTTGAC
TTAGTTTTAGGTGGAGGTATTGTTCCAGGAAGTTTAACTCTTATTGGTGGAAGTCCAGGGGTTGGTAAGTCAACCCTACT
TTTAAAAGTAGCAGGAAGTATCGCAAGCTCTGGTAAAAAAGTTTTATATGTATCAGGTGAAGAGAGTGCTGGTCAAATAA
AACTGCGAGCAAATAGACTTGAAGCAAACAATGACAACATGTACTTACTTAGTGAAATAAAACTTGAAGAGATTCAAGAT
GAGTTACTAAGACAAGATTATGAAGTATGTATCATCGACTCTATTCAAACTATCTATTCATCAAACCTTACTAGTGCCCC
AGGAAGTGTATCTCAAGTACGTGAAATCACATTTGAGCTTATGAGAAAAGCGAAAGATAGTGATATAGCTATGTTTATCA
TTGGACACATCACAAAAGATGGTTCAATAGCAGGACCAAGAGTACTTGAACACATGGTTGATACAGTTTTATACTTTGAA
GGTGAAGCCTCAAAAGAACTTAGGATGTTAAGAGGTTTTAAAAACAGATTTGGTTCAACTTCAGAAATCGGTATTTTTGA
GATGAGTGCAGAAGGACTTATAAGTGCAAAAGATATCGCTTCAAAATTCTTTGATAAAAGCAAAGCCCAAGCAGGTTCAG
CCCTAACAGTTTCTATGAAAGGAAGTCGTGCAATCATACTTGAAGTTCAAGCTTTAGTAACAGAAAGTACATATCCAAAC
CCAAAAAGAAGTGCCACAGGATTTGATGCAAATAGACTTACGATGCTTTTAGCCCTATTAGAGAAAAAGATTGATTTACC
ACTAAATCACTATGATGTATTTATAAATATCTCAGGTGGCATAAAAATCAAAGAAAGCTCAGCAGACTTAGCAGTGATTG
CAGCGATTATCTCAAGTTTTAGGGATAGACCTATTTCTAAAGAGTCAGTATTTATCGGTGAAGTTTCTCTAACTGGTGAG
ATTAAAGATGTTTATTCATTAGATTTAAGATTAAAAGAAGCACAAGCACAAGGTATCAAAAAAGCAGTAATCGCTCAAAA
GCCATCACTAAAACTTGATATCAAAACATTTGCAGTGGACGAAGTTCCTAAAATGATAGAGTTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(65-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C2H748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.492
  radA Streptococcus mitis NCTC 12261

48.252

95.546

0.461
  radA Streptococcus mitis SK321

48.252

95.546

0.461
  radA Streptococcus pneumoniae Rx1

48.252

95.546

0.461
  radA Streptococcus pneumoniae D39

48.252

95.546

0.461
  radA Streptococcus pneumoniae R6

48.252

95.546

0.461
  radA Streptococcus pneumoniae TIGR4

48.252

95.546

0.461

Multiple sequence alignment