Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GD578_RS17350 Genome accession   NZ_CP045560
Coordinates   3586876..3587340 (-) Length   154 a.a.
NCBI ID   WP_002051759.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3581876..3592340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS17320 (GD578_17540) - 3582381..3583415 (+) 1035 WP_002051740.1 lipase secretion chaperone -
  GD578_RS17325 (GD578_17545) - 3583530..3584471 (+) 942 WP_081400987.1 triacylglycerol lipase -
  GD578_RS17330 (GD578_17550) rplS 3584523..3584891 (-) 369 WP_002051668.1 50S ribosomal protein L19 -
  GD578_RS17335 (GD578_17555) trmD 3585107..3585862 (-) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GD578_RS17340 (GD578_17560) rimM 3585909..3586457 (-) 549 WP_002051736.1 ribosome maturation factor RimM -
  GD578_RS17345 (GD578_17565) rpsP 3586477..3586728 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  GD578_RS17350 (GD578_17570) comF 3586876..3587340 (-) 465 WP_002051759.1 type IV pilin protein Machinery gene
  GD578_RS17355 (GD578_17575) comE 3587334..3587810 (-) 477 WP_039246155.1 type IV pilin protein Machinery gene
  GD578_RS17360 (GD578_17580) - 3587824..3591501 (-) 3678 WP_002051641.1 PilC/PilY family type IV pilus protein -
  GD578_RS17365 (GD578_17585) - 3591517..3592299 (-) 783 WP_002051645.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16756.23 Da        Isoelectric Point: 8.9627

>NTDB_id=345104 GD578_RS17350 WP_002051759.1 3586876..3587340(-) (comF) [Acinetobacter nosocomialis strain AC1530]
MVNKIKGFTLIELMIVVAIIAILVAIAYPSYQEYIRRTNRADMQTTLQQIAMQIQRYKIANFRVTGATSSDLNIATSYPI
QGTPLYTVNLAPVTAGALNAEAWILTATPIANTSQSGDGHIVLNYRGERCWTKGTDINSGTACVPSATSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=345104 GD578_RS17350 WP_002051759.1 3586876..3587340(-) (comF) [Acinetobacter nosocomialis strain AC1530]
GTGGTAAATAAAATAAAAGGCTTTACATTAATTGAGCTAATGATTGTTGTAGCTATTATCGCGATTTTAGTGGCGATAGC
TTACCCCTCTTATCAAGAATATATTCGTCGTACTAATCGTGCGGATATGCAAACTACTTTGCAACAGATTGCTATGCAGA
TCCAACGCTACAAAATTGCAAATTTTAGGGTAACGGGAGCAACGAGTTCTGATTTAAATATTGCCACTTCTTATCCTATA
CAAGGCACACCTCTTTATACAGTCAATTTGGCTCCAGTGACAGCTGGCGCTTTAAATGCGGAAGCATGGATATTGACCGC
GACGCCGATTGCAAATACTTCGCAGTCCGGTGATGGGCATATTGTTTTAAATTATCGTGGTGAGCGTTGCTGGACAAAGG
GAACTGATATTAACAGTGGTACGGCTTGCGTTCCTTCTGCAACATCGAATTGGGATGGTAAATAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

48.993

96.753

0.474
  pilE Acinetobacter baumannii D1279779

47.26

94.805

0.448

Multiple sequence alignment