Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   GD578_RS15945 Genome accession   NZ_CP045560
Coordinates   3310243..3310758 (+) Length   171 a.a.
NCBI ID   WP_153518686.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain AC1530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305243..3315758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS15930 (GD578_16145) - 3305584..3307044 (+) 1461 WP_017394121.1 amino acid permease -
  GD578_RS15935 (GD578_16150) - 3307321..3308526 (+) 1206 WP_017394122.1 RtcB family protein -
  GD578_RS20120 - 3308530..3308688 (+) 159 WP_017394123.1 hypothetical protein -
  GD578_RS15940 (GD578_16155) omp38 3308814..3309863 (-) 1050 WP_017394124.1 outer membrane protein Omp38 -
  GD578_RS15945 (GD578_16160) fimT 3310243..3310758 (+) 516 WP_153518686.1 GspH/FimT family pseudopilin Machinery gene
  GD578_RS15950 (GD578_16165) - 3310867..3312042 (+) 1176 WP_017394126.1 thiolase family protein -
  GD578_RS15955 (GD578_16170) - 3312168..3312611 (+) 444 WP_017394127.1 VOC family protein -
  GD578_RS15960 (GD578_16175) - 3312664..3313017 (-) 354 WP_002051463.1 multidrug efflux SMR transporter -
  GD578_RS15965 (GD578_16180) - 3313096..3313581 (-) 486 WP_017394128.1 DUF934 domain-containing protein -
  GD578_RS15970 (GD578_16185) - 3313574..3315217 (-) 1644 WP_004712033.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19454.63 Da        Isoelectric Point: 8.4894

>NTDB_id=345099 GD578_RS15945 WP_153518686.1 3310243..3310758(+) (fimT) [Acinetobacter nosocomialis strain AC1530]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIQHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNYTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFMYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=345099 GD578_RS15945 WP_153518686.1 3310243..3310758(+) (fimT) [Acinetobacter nosocomialis strain AC1530]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTCAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAATCTACAGCATGATTTAAATGAAGAATTATTAACATCTATAGATCT
TAACTATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGTAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATGTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427