Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CCO2228_RS06785 Genome accession   NZ_CP035927
Coordinates   1329116..1330084 (+) Length   322 a.a.
NCBI ID   WP_002777769.1    Uniprot ID   -
Organism   Campylobacter coli strain RM2228     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324116..1335084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS06760 (CCO2228_1321) - 1324972..1325697 (-) 726 WP_002777758.1 phosphatidate cytidylyltransferase -
  CCO2228_RS06765 (CCO2228_1322) - 1325706..1326044 (-) 339 WP_002777761.1 hypothetical protein -
  CCO2228_RS06770 (CCO2228_1323) - 1326046..1327353 (-) 1308 WP_048813176.1 NFACT family protein -
  CCO2228_RS06775 (CCO2228_1324) - 1327416..1327991 (+) 576 WP_002797427.1 molybdenum cofactor guanylyltransferase -
  CCO2228_RS06780 (CCO2228_1325) - 1328090..1328983 (+) 894 WP_002777767.1 phospholipase A -
  CCO2228_RS06785 (CCO2228_1326) ceuB 1329116..1330084 (+) 969 WP_002777769.1 ABC transporter permease Machinery gene
  CCO2228_RS06790 (CCO2228_1327) - 1330077..1331015 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  CCO2228_RS06795 (CCO2228_1328) - 1331012..1331767 (+) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  CCO2228_RS06800 (CCO2228_1329) - 1331782..1332771 (+) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  CCO2228_RS06805 (CCO2228_1330) - 1332937..1333569 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35539.39 Da        Isoelectric Point: 9.5069

>NTDB_id=345091 CCO2228_RS06785 WP_002777769.1 1329116..1330084(+) (ceuB) [Campylobacter coli strain RM2228]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=345091 CCO2228_RS06785 WP_002777769.1 1329116..1330084(+) (ceuB) [Campylobacter coli strain RM2228]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACACAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.752

100

0.898

Multiple sequence alignment