Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GD578_RS08600 Genome accession   NZ_CP045560
Coordinates   1762246..1762881 (+) Length   211 a.a.
NCBI ID   WP_002049809.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain AC1530     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1757246..1767881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS08575 (GD578_08675) - 1758086..1759099 (+) 1014 WP_153518460.1 aminoglycoside phosphotransferase family protein -
  GD578_RS08580 (GD578_08680) murU 1759099..1759788 (+) 690 WP_002049766.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  GD578_RS08585 (GD578_08685) rsmG 1759876..1760508 (+) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  GD578_RS08590 (GD578_08690) - 1760530..1761312 (+) 783 WP_002050124.1 ParA family protein -
  GD578_RS08595 (GD578_08695) - 1761309..1762196 (+) 888 WP_002049896.1 ParB/RepB/Spo0J family partition protein -
  GD578_RS08600 (GD578_08700) exbB 1762246..1762881 (+) 636 WP_002049809.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GD578_RS08605 (GD578_08705) - 1762897..1763325 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  GD578_RS08610 (GD578_08710) msbA 1763322..1765049 (+) 1728 WP_002050075.1 lipid A export permease/ATP-binding protein MsbA -
  GD578_RS08615 (GD578_08715) lpxK 1765052..1766062 (+) 1011 WP_002050028.1 tetraacyldisaccharide 4'-kinase -
  GD578_RS08620 (GD578_08720) kdsB 1766072..1766833 (+) 762 WP_002050006.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GD578_RS08625 (GD578_08725) - 1766845..1767825 (+) 981 WP_153518462.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23059.90 Da        Isoelectric Point: 6.9793

>NTDB_id=345077 GD578_RS08600 WP_002049809.1 1762246..1762881(+) (exbB) [Acinetobacter nosocomialis strain AC1530]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDTDASSTALGNILKAGFEHQ
AHGEQFARAQMEAIASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=345077 GD578_RS08600 WP_002049809.1 1762246..1762881(+) (exbB) [Acinetobacter nosocomialis strain AC1530]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATCACAAATTTGGAGCAAGATACTGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GCGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATCGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGTTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTGCAAAATTACATTGCGGAGTTAGAGCA
GCAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422