Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Len3610_RS16335 Genome accession   NZ_CP035925
Coordinates   3322407..3323780 (+) Length   457 a.a.
NCBI ID   WP_176448880.1    Uniprot ID   -
Organism   Lentibacillus sp. CBA3610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3317407..3328780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Len3610_RS16320 (Len3610_16275) - 3317545..3318069 (+) 525 WP_176448877.1 UvrB/UvrC motif-containing protein -
  Len3610_RS16325 (Len3610_16280) - 3318066..3319130 (+) 1065 WP_176448878.1 protein arginine kinase -
  Len3610_RS16330 (Len3610_16285) clpC 3319148..3321577 (+) 2430 WP_176448879.1 ATP-dependent protease ATP-binding subunit ClpC -
  Len3610_RS16335 (Len3610_16290) radA 3322407..3323780 (+) 1374 WP_176448880.1 DNA repair protein RadA Machinery gene
  Len3610_RS16340 (Len3610_16295) - 3324002..3325105 (+) 1104 WP_176449718.1 PIN/TRAM domain-containing protein -
  Len3610_RS16345 (Len3610_16300) gltX 3325216..3326685 (+) 1470 WP_176448881.1 glutamate--tRNA ligase -
  Len3610_RS16350 (Len3610_16305) epsC 3327103..3327771 (+) 669 WP_176448882.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50233.66 Da        Isoelectric Point: 6.4268

>NTDB_id=345066 Len3610_RS16335 WP_176448880.1 3322407..3323780(+) (radA) [Lentibacillus sp. CBA3610]
MAKRKMKYVCQECGYESAKWMGKCPGCNSWNTLVEEMEASSVSNRHTMSRDTKSVGQPESITAVEIQKEHRITTSMDEFN
RVLGGGIVPGSLALIGGDPGIGKSTLLLQISSQLADKHLPVLYISGEESIRQTKLRADRLGVTSDLLYVLSETNLFDIVN
HIEQTKPAFVVIDSIQTIYREEVSSAPGSVSQVRESTSELMRVAKSNGTPVFIVGHVTKEGAIAGPRMLEHMVDAVLYFE
GERHHTYRIVRSVKNRFGSTHEMGIFEMKEEGLKEVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGIDTNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAIAVSIASSFRNQPTKPEDIVIGEVGLTG
EIRRVARIEQRVQEAAKLGFKRVICPQKNLEGWTPPESIQVIGVNSVQEALEEGLMR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=345066 Len3610_RS16335 WP_176448880.1 3322407..3323780(+) (radA) [Lentibacillus sp. CBA3610]
GTGGCTAAACGAAAGATGAAGTACGTTTGTCAGGAATGTGGCTATGAATCTGCTAAATGGATGGGCAAATGCCCCGGATG
CAACAGCTGGAACACACTGGTGGAGGAAATGGAAGCATCTTCTGTAAGTAATCGGCATACAATGAGCAGGGATACAAAAT
CGGTGGGTCAGCCTGAAAGCATCACAGCGGTCGAAATACAGAAAGAGCATCGCATTACAACATCGATGGATGAATTCAAC
CGCGTGCTTGGGGGCGGCATTGTGCCAGGATCACTTGCATTGATTGGTGGCGATCCGGGAATAGGGAAGTCAACACTGCT
GCTCCAAATATCTTCTCAATTAGCCGATAAGCACTTGCCCGTTCTTTATATCTCCGGTGAAGAATCAATCCGGCAAACCA
AACTGCGGGCGGACCGTCTTGGTGTCACGTCAGATTTATTGTATGTATTATCTGAAACCAATTTATTTGATATCGTCAAT
CACATTGAGCAAACGAAGCCTGCATTTGTTGTGATTGACTCCATACAGACAATTTATCGTGAAGAAGTGTCGAGTGCTCC
GGGCAGTGTGTCTCAGGTACGTGAAAGTACAAGTGAACTCATGCGCGTTGCCAAATCGAACGGGACCCCTGTTTTTATTG
TCGGGCATGTGACCAAAGAAGGTGCCATTGCCGGACCACGGATGCTGGAGCATATGGTTGATGCCGTTCTTTATTTTGAA
GGGGAACGTCATCATACATACCGGATCGTGCGCAGTGTTAAAAATCGGTTTGGCAGTACGCATGAGATGGGTATTTTTGA
AATGAAAGAAGAGGGTTTAAAAGAAGTTATGAATCCCTCTGAAATCTTTTTGGAAGAACGTTCACAGGGAGCAGCAGGAT
CGACGGTTGTGGCCTCGATGGAGGGAACACGTCCTGTTCTCGTTGAAATACAAGCATTGATATCGCCAACCAGTTTTGGC
AATCCAAGGCGAATGGCAACAGGGATAGACACAAACCGGGTGCCGCTTTTAATGGCGGTTTTAGAAAAGCGTGTTGGACT
AATGCTGCAAAATCAGGATGCCTATATCAAAGTAGCGGGCGGGGTGAAACTCGATGAGCCGGCAATTGATCTGGCTATAG
CTGTCAGCATTGCATCCAGCTTCCGGAATCAGCCGACTAAGCCAGAAGACATTGTCATTGGTGAAGTTGGGCTGACCGGT
GAAATCAGACGGGTGGCACGAATTGAGCAACGTGTACAGGAAGCGGCAAAATTGGGATTCAAACGCGTTATATGTCCCCA
GAAAAATCTGGAAGGCTGGACACCGCCTGAATCGATTCAGGTAATTGGTGTCAACAGTGTACAGGAAGCCTTGGAGGAAG
GGTTAATGCGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-221)

Subunit ChlI of Mg-chelatase (ChlI)

(358-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.053

99.781

0.709
  radA Streptococcus mitis NCTC 12261

61.148

99.125

0.606
  radA Streptococcus mitis SK321

61.148

99.125

0.606
  radA Streptococcus pneumoniae Rx1

60.927

99.125

0.604
  radA Streptococcus pneumoniae D39

60.927

99.125

0.604
  radA Streptococcus pneumoniae R6

60.927

99.125

0.604
  radA Streptococcus pneumoniae TIGR4

60.927

99.125

0.604

Multiple sequence alignment