Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Len3610_RS06415 Genome accession   NZ_CP035925
Coordinates   1266601..1268307 (-) Length   568 a.a.
NCBI ID   WP_176447221.1    Uniprot ID   A0A7H8S5P6
Organism   Lentibacillus sp. CBA3610     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261601..1273307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Len3610_RS06395 (Len3610_06405) - 1261849..1262082 (+) 234 WP_176447217.1 DUF2627 domain-containing protein -
  Len3610_RS06400 (Len3610_06410) - 1262135..1263481 (+) 1347 WP_176447218.1 aspartate kinase -
  Len3610_RS06405 (Len3610_06415) spo0A 1264058..1264840 (-) 783 WP_176447219.1 sporulation transcription factor Spo0A -
  Len3610_RS06410 (Len3610_06420) spoIVB 1265115..1266422 (-) 1308 WP_176447220.1 SpoIVB peptidase -
  Len3610_RS06415 (Len3610_06425) recN 1266601..1268307 (-) 1707 WP_176447221.1 DNA repair protein RecN Machinery gene
  Len3610_RS06420 (Len3610_06430) argR 1268324..1268773 (-) 450 WP_176447222.1 transcriptional regulator AhrC/ArgR -
  Len3610_RS06425 (Len3610_06435) - 1268798..1269622 (-) 825 WP_176447223.1 TlyA family RNA methyltransferase -
  Len3610_RS06430 (Len3610_06440) - 1269648..1270238 (-) 591 WP_176447224.1 hypothetical protein -
  Len3610_RS06435 (Len3610_06445) - 1270912..1271802 (-) 891 WP_176447225.1 polyprenyl synthetase family protein -
  Len3610_RS06440 (Len3610_06450) - 1271799..1272032 (-) 234 WP_176447226.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64582.54 Da        Isoelectric Point: 4.9675

>NTDB_id=345042 Len3610_RS06415 WP_176447221.1 1266601..1268307(-) (recN) [Lentibacillus sp. CBA3610]
MLTELSIQDFAIIDNLSITFNDGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEYVRHGTNRAEIEGLFTLDSNTHQIYKT
AELYGINIQDEMVVLHRTITSGGKSICRVNGKLVTLAILKEFGKNLIDIHSQHETQSLLNADNHIQLLDLYDVKRITKTK
EEYANLYHKLSGLQKRYKELSENEQEISQRLDLLKFQKNEIEQANLVPDEDDQLEEERSQLANFERIYNGLQDAYNALYG
EQKGLEWLNIANQALQTSSEYDTFISEKSEEMSNHYFLIEELMYELRNYTDTLEYDPERLNEIESRLNEINRLKKKYGQT
VNDILEYLGKIEEELEEITNKDSHLSKLEKQIDEIYHDAYLEAKELHDLRRKAAESLTHNIHNELKDLYLEKSSFSVSFN
TSNKAGEYPKLHQNGFDFIHFQISTNPGEPLKPLHKVASGGELSRIMLALKGIFAKDQGITSVIFDEVDTGVSGRVAQAI
AEKIQQISTQSQVLCITHLPQVAAMSDTHKLIQKHENNNRTSTSVVGLSENEKINELGRMITGTQLTNTAKDHATELLEL
ASKYKKTI

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=345042 Len3610_RS06415 WP_176447221.1 1266601..1268307(-) (recN) [Lentibacillus sp. CBA3610]
GTGCTGACAGAATTATCAATACAGGATTTTGCGATTATAGACAATTTATCGATCACATTTAATGATGGTCTAACGGTTTT
GACCGGCGAAACAGGAGCAGGAAAATCAATTATTATTGATGCCGTTCAATTACTGGCTGGCGGTCGCGGATCTGTTGAAT
ATGTACGGCATGGAACAAACAGGGCGGAAATTGAAGGTCTATTCACTTTAGACTCAAACACACACCAGATTTATAAGACA
GCTGAGTTATATGGGATTAATATACAGGATGAGATGGTTGTGCTTCACCGGACGATTACATCAGGCGGAAAGAGTATTTG
CAGGGTTAACGGCAAGTTAGTGACATTGGCGATTTTAAAAGAATTTGGCAAAAATTTAATCGATATACACAGTCAGCATG
AGACCCAATCATTACTGAATGCAGACAACCACATTCAGCTGCTGGATTTATATGACGTTAAGCGGATAACAAAGACGAAA
GAGGAATATGCGAACTTATATCATAAACTTTCCGGATTACAAAAGCGGTATAAGGAATTAAGTGAAAATGAACAGGAAAT
ATCTCAGCGCCTGGATTTGCTTAAGTTCCAGAAAAATGAAATCGAACAAGCGAATCTTGTTCCGGATGAAGATGATCAGC
TGGAAGAAGAGCGCAGCCAATTGGCGAATTTTGAACGTATTTATAATGGCCTGCAGGACGCTTATAATGCGCTGTATGGT
GAACAAAAAGGTTTGGAATGGCTTAATATCGCCAATCAAGCACTCCAGACCAGCAGTGAATATGATACATTCATCTCTGA
AAAGTCTGAGGAAATGTCCAATCATTATTTTCTAATCGAGGAATTGATGTATGAACTGCGCAATTATACAGATACTTTGG
AATATGACCCCGAGCGTCTGAATGAAATTGAATCACGATTGAATGAGATCAACCGATTAAAGAAAAAATATGGTCAAACC
GTCAATGACATTTTAGAGTACCTTGGAAAAATTGAAGAAGAACTGGAAGAGATCACGAATAAAGATTCGCACTTATCAAA
GCTGGAGAAGCAAATTGACGAAATTTACCACGATGCCTACCTGGAAGCGAAGGAACTGCATGATCTGCGCAGAAAGGCCG
CCGAATCATTAACGCATAATATCCATAATGAATTAAAAGACCTATACTTGGAAAAATCTTCTTTTTCAGTTTCTTTTAAC
ACAAGCAATAAAGCAGGGGAATATCCCAAACTGCACCAAAATGGTTTCGACTTTATTCATTTTCAAATATCGACTAATCC
GGGAGAACCGCTGAAACCGTTGCATAAAGTGGCATCGGGTGGTGAATTGTCACGTATTATGCTGGCGTTAAAAGGAATTT
TTGCCAAGGATCAAGGTATTACAAGTGTTATATTTGACGAGGTGGATACTGGCGTCAGCGGGCGAGTGGCACAGGCAATA
GCTGAAAAAATTCAGCAAATTTCCACCCAGTCACAAGTATTATGTATAACACACTTGCCACAGGTTGCTGCCATGTCGGA
TACCCACAAACTCATTCAAAAGCATGAAAATAACAATCGGACTTCAACCAGTGTTGTGGGATTATCCGAAAACGAAAAAA
TAAATGAATTAGGCCGTATGATAACAGGCACTCAATTAACAAATACTGCAAAAGACCATGCAACTGAATTACTTGAACTG
GCCTCCAAATACAAAAAAACAATATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8S5P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.819

100

0.546

Multiple sequence alignment