Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EWA64_RS17780 Genome accession   NZ_CP035922
Coordinates   497945..499042 (+) Length   365 a.a.
NCBI ID   WP_061895972.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 492945..504042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS17750 - 493131..494471 (-) 1341 WP_061895977.1 MATE family efflux transporter -
  EWA64_RS17755 - 494640..494957 (-) 318 WP_039427122.1 DUF496 family protein -
  EWA64_RS17760 - 495231..495434 (+) 204 WP_061895976.1 hypothetical protein -
  EWA64_RS17765 - 495534..496193 (+) 660 WP_061895975.1 YceH family protein -
  EWA64_RS17770 - 496193..496489 (+) 297 WP_061895974.1 GIY-YIG nuclease family protein -
  EWA64_RS17775 traF 496562..497722 (+) 1161 WP_061895973.1 conjugal transfer protein TraF -
  EWA64_RS17780 luxP 497945..499042 (+) 1098 WP_061895972.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EWA64_RS17785 luxQ 499046..501613 (+) 2568 WP_061895971.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  EWA64_RS17790 - 501648..502310 (-) 663 WP_061895970.1 flagellar brake protein -
  EWA64_RS17795 - 502450..503388 (-) 939 WP_061895969.1 DMT family transporter -
  EWA64_RS17800 - 503529..503984 (+) 456 WP_061895968.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41496.14 Da        Isoelectric Point: 5.9984

>NTDB_id=345015 EWA64_RS17780 WP_061895972.1 497945..499042(+) (luxP) [Vibrio cidicii strain 2423-01]
MKKALMMSLLCIANFSANAQTSEVLNGYWAYQEYLERFPEQADLTNALAQTVRNHPVPLKAYQAKPIRISVVFPGQQVSD
YWVRNLSAFEKRMDKLQISYQINQVFTRPNTDIKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSDTKLILQNI
TTPVQAWEKRQPFLYVGFDHAQGSIALAKQLEKMYPQGGKYSVLYFSEGYVSDARGDTFIRELNRDNHFQLRSSFYTKAT
KESGYETAMMSLEKYPDVNFIYACSTDVALGALDALKELKRDDIVLNGWGGGSAELDAISVGDLDLTVMRMNDDTGIAMA
EAIKWDLEGKKVPTVFSGDFELVTKEDSPQHIEALKERAFRYSGQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=345015 EWA64_RS17780 WP_061895972.1 497945..499042(+) (luxP) [Vibrio cidicii strain 2423-01]
ATGAAAAAAGCATTAATGATGTCTTTGCTTTGTATAGCAAATTTTAGTGCTAATGCACAAACTTCAGAAGTCTTGAACGG
GTATTGGGCGTATCAAGAATATTTAGAGCGTTTCCCAGAACAAGCCGATTTAACTAACGCACTTGCGCAAACGGTACGTA
ACCATCCTGTGCCGCTTAAAGCATATCAAGCTAAACCGATACGTATTTCGGTGGTCTTTCCCGGTCAACAAGTGTCTGAT
TATTGGGTTAGGAATCTGAGTGCGTTTGAGAAACGCATGGATAAGTTGCAGATAAGCTATCAAATTAACCAAGTGTTCAC
CCGTCCAAATACCGATATCAAGCAGCAAAGTGTCTCATTGATGGAAGCGCTAAAAAGTAAGTCGGATTATCTTATTTTTA
CCCTAGACACCACCCGCCACCGCAAGTTCATTGAGCATGTGCTTGACTCCTCAGACACGAAGCTGATCTTGCAAAACATC
ACCACGCCAGTACAAGCATGGGAAAAACGTCAGCCATTTTTGTATGTCGGTTTCGATCATGCGCAAGGTAGCATTGCGCT
GGCTAAGCAATTGGAAAAAATGTATCCACAGGGCGGCAAATACTCTGTGCTCTATTTCTCAGAAGGCTATGTTAGTGACG
CCAGAGGCGATACGTTTATTCGTGAACTAAACAGGGATAACCATTTTCAATTGCGCTCGTCGTTCTACACCAAAGCGACC
AAAGAATCTGGCTACGAGACCGCAATGATGAGCTTAGAAAAGTACCCAGATGTTAATTTCATCTATGCCTGCTCGACCGA
TGTCGCCTTAGGCGCGCTCGATGCGTTAAAAGAGCTCAAACGAGACGACATTGTGCTCAACGGCTGGGGCGGTGGATCGG
CGGAGTTGGATGCCATCAGCGTTGGCGATCTCGATCTTACTGTCATGCGAATGAATGATGATACGGGTATTGCTATGGCC
GAAGCGATTAAATGGGATTTGGAAGGGAAGAAAGTCCCGACCGTATTTTCAGGAGATTTTGAATTGGTGACCAAAGAAGA
TAGTCCGCAGCACATTGAAGCGCTCAAAGAGAGAGCCTTCAGATATTCTGGCCAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.463

99.452

0.641

Multiple sequence alignment