Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EWA64_RS15345 Genome accession   NZ_CP035921
Coordinates   3155558..3156979 (-) Length   473 a.a.
NCBI ID   WP_061894049.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3150558..3161979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS15320 - 3151246..3151899 (+) 654 WP_061894044.1 thiopurine S-methyltransferase -
  EWA64_RS15325 purT 3151980..3153155 (-) 1176 WP_061894045.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  EWA64_RS15330 cdd 3153290..3154177 (-) 888 WP_061894046.1 cytidine deaminase -
  EWA64_RS15335 - 3154459..3155136 (-) 678 WP_061894047.1 LrgB family protein -
  EWA64_RS15340 - 3155138..3155509 (-) 372 WP_061894048.1 CidA/LrgA family protein -
  EWA64_RS15345 sbcB 3155558..3156979 (-) 1422 WP_061894049.1 exodeoxyribonuclease I Machinery gene
  EWA64_RS15350 - 3157115..3157282 (-) 168 WP_244881436.1 hypothetical protein -
  EWA64_RS15355 - 3157330..3157818 (-) 489 WP_244881437.1 NAD(P)H-binding protein -
  EWA64_RS15360 cobT 3157958..3158986 (+) 1029 WP_061894050.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  EWA64_RS15365 - 3158987..3159760 (+) 774 WP_061894051.1 adenosylcobinamide-GDP ribazoletransferase -
  EWA64_RS15370 cobU 3159769..3160317 (+) 549 WP_061894052.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  EWA64_RS15375 cobC 3160310..3160969 (+) 660 WP_061894053.1 alpha-ribazole phosphatase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54685.92 Da        Isoelectric Point: 5.1688

>NTDB_id=345013 EWA64_RS15345 WP_061894049.1 3155558..3156979(-) (sbcB) [Vibrio cidicii strain 2423-01]
MHQDNQPTFFFFDYETWGVSPAKDRPSQFAGVRTDENFNVIGEPLVIYCRLPSDYLPAPEAALITGITPQKAMQEGLSEP
EFISKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGITWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKLKAAQPKLFDYFFNMRHKRKLNALIDIVNMTPLMHVSGMLGRECQY
TSWVVPLAWHPTNNNAVIVIDLAKDPQPLFELSAEQLHERLYTKREDLDELLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLAQIRQHPEVREKLVQLFSIEREFADSDDVDSKLYDGFFSPADRAAMDIIRQTEPNNLAALDITFNDKR
IDPLLFRYRARNYPWTLNESEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKIAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=345013 EWA64_RS15345 WP_061894049.1 3155558..3156979(-) (sbcB) [Vibrio cidicii strain 2423-01]
ATGCACCAGGATAATCAGCCTACATTCTTCTTTTTTGATTATGAAACTTGGGGAGTAAGCCCCGCTAAAGACCGCCCTTC
CCAGTTTGCGGGGGTACGCACCGACGAAAATTTCAATGTGATTGGCGAGCCGCTGGTTATCTACTGCCGATTGCCAAGCG
ACTATCTTCCAGCGCCAGAAGCGGCCTTGATTACCGGCATTACCCCGCAAAAAGCGATGCAAGAGGGGCTGTCTGAGCCC
GAATTTATTAGCAAAATCCATGCAGAGCTGTCAAAACCCAACACCACTAGCCTTGGCTACAACAGCATTCGTTTTGACGA
CGAAGTCACTCGCTATACCTGTTATCGCAATTTCATTGATCCTTATGCGTGGAGTTGGCAAAACGGCAACTCGCGTTGGG
ATCTGCTGGATGTGATGCGCGCTTGTCACGCCCTTCGCCCAGAAGGCATTACTTGGCCGGAAAATGATGAGGGCTTTACC
AGCTTCAAATTGGAGCATCTGTCCGTCGCCAACGGCATCGAACACAGCAACGCGCACGATGCGATGGCCGACGTTATTGC
CACGATTGAGATGGCCAAAAAGCTCAAAGCGGCCCAGCCGAAACTGTTTGATTACTTTTTCAACATGCGCCATAAACGTA
AGCTGAATGCGCTGATTGATATCGTCAACATGACCCCCTTGATGCACGTATCCGGCATGCTTGGCCGTGAATGTCAGTAC
ACCAGTTGGGTGGTGCCTTTGGCTTGGCATCCGACCAATAACAACGCTGTGATCGTGATCGATTTGGCGAAAGATCCACA
GCCGCTGTTTGAGCTAAGCGCCGAGCAGTTACACGAACGCCTTTACACCAAGCGAGAAGATCTTGACGAGCTGCTGCCAG
TACCAGTGAAATTGGTGCATCTCAATAAATGTCCCATTTTGGCTCCTGCGAAAACGCTGACAGCAGAAAATGCGGCGAAT
ATTGGTATTGACCGCGAGCAGTGTTTGGCCAACTTAGCGCAGATACGTCAACACCCAGAAGTGCGGGAAAAATTGGTGCA
ACTTTTTTCCATTGAACGCGAGTTTGCCGATAGTGATGATGTCGACAGTAAGTTGTACGACGGTTTCTTCTCACCAGCCG
ATCGCGCCGCGATGGATATTATTCGTCAAACCGAGCCAAACAACCTCGCTGCGCTCGACATCACCTTTAACGACAAGCGC
ATTGATCCGCTGCTGTTTCGTTATCGTGCGCGTAACTATCCGTGGACATTGAATGAGAGCGAACAACGTCGCTGGGCCAA
CCATTGCCGAGAGTACTTCGAAAGTCGTATTGAAGAGTACATGCTCAATTTGGAAAACTTGGTGCATGAGCACGAAAGCG
ATGAAAAGAAAATAGCGATATTGAAATCGGTTTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.184

100

0.812

Multiple sequence alignment