Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EWA64_RS07325 Genome accession   NZ_CP035921
Coordinates   1393242..1394249 (+) Length   335 a.a.
NCBI ID   WP_061895816.1    Uniprot ID   A0A151JII7
Organism   Vibrio cidicii strain 2423-01     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388242..1399249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS07315 rpmE 1390356..1390577 (-) 222 WP_061895818.1 50S ribosomal protein L31 -
  EWA64_RS07320 priA 1390839..1393040 (+) 2202 WP_061895817.1 primosomal protein N' -
  EWA64_RS07325 cytR 1393242..1394249 (+) 1008 WP_061895816.1 DNA-binding transcriptional regulator CytR Regulator
  EWA64_RS07330 - 1394638..1395183 (+) 546 WP_139045733.1 SPOR domain-containing protein -
  EWA64_RS07335 hslV 1395617..1396171 (+) 555 WP_061895814.1 ATP-dependent protease subunit HslV -
  EWA64_RS07340 hslU 1396197..1397528 (+) 1332 WP_039422957.1 HslU--HslV peptidase ATPase subunit -
  EWA64_RS07345 - 1398104..1399021 (+) 918 WP_039442047.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36901.45 Da        Isoelectric Point: 5.7313

>NTDB_id=344995 EWA64_RS07325 WP_061895816.1 1393242..1394249(+) (cytR) [Vibrio cidicii strain 2423-01]
MATMKDVAQLAGVSTATVSRALMNPEKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFDAVNYLTQLGHKRIAQISGPSSAVLCQFRQQGYQQALRRAGITMNPDYCAEAEFSFTGGKEAIRQLLELPEPPTA
VFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEVLKGHEIHSGSRLLE
TQLVIRGSAAPPRVR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=344995 EWA64_RS07325 WP_061895816.1 1393242..1394249(+) (cytR) [Vibrio cidicii strain 2423-01]
ATGGCGACAATGAAGGATGTTGCCCAGCTCGCTGGTGTCTCGACCGCCACGGTCTCAAGAGCACTAATGAATCCCGAAAA
AGTGTCGGCCACCACCAGAAAACGGGTGGAAGACGCGGTTTTAGAGGCTGGATATTCACCAAACTCGCTTGCAAGAAATT
TACGTCGGAATGAATCAAAAACCATAGTAACGATTGTCCCAGACATCTGCGACCCCTACTTTACCGAGATTATTCGCGGT
ATCGAAGACGCAGCGATGGAACAAGGCTACTTAGTTTTACTGGGCGACAGTGGTCAGCAAAAGCGGCGCGAAAGCTCGTT
TGTCAACCTTGTTTTCACCAAGCAAGCTGATGGCATGTTGCTGCTTGGCACCGATCTGCCGTTTGATGTCAGCAAACCGG
AGCAAAAAAACCTGCCACCGATGGTGATGGCATGTGAGTTCGCCCCCGAACTTGAACTGCCCACCGTACACATCGATAAC
CTGACTTCGGCCTTTGATGCCGTGAACTACTTAACGCAACTTGGACACAAACGCATCGCGCAAATCTCTGGCCCATCTTC
TGCGGTGCTGTGCCAATTTCGACAGCAAGGTTACCAGCAAGCACTACGACGCGCTGGCATTACTATGAATCCGGATTATT
GCGCGGAAGCTGAGTTTTCGTTCACCGGCGGTAAAGAGGCTATTCGCCAACTATTGGAGTTACCTGAGCCACCCACAGCG
GTATTCTGCCACTGCGATACCATGGCGATTGGCGCTATTCAAGAAGCGAAAAAACTGGGTCTGCGCGTTCCGCAAGATCT
CTCTGTGGTCGGTTTTGACGACATTCAATTTGCCCAATACTGCGATCCCCCTCTGACCACCATCTCTCAGCCGCGCTATG
AAATTGGCCGTCAAGCGATGTTGATGATGCTTGAGGTGCTCAAAGGACATGAGATCCACAGTGGCTCTCGCCTGCTCGAA
ACGCAACTGGTGATCCGTGGCAGTGCCGCGCCACCGAGAGTACGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151JII7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

90.991

99.403

0.904
  cytR Vibrio cholerae C6706

88.855

99.104

0.881

Multiple sequence alignment