Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EWA64_RS05905 Genome accession   NZ_CP035921
Coordinates   1089769..1090287 (-) Length   172 a.a.
NCBI ID   WP_039430460.1    Uniprot ID   A0A0F2HW57
Organism   Vibrio cidicii strain 2423-01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084769..1095287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS05880 rimM 1084840..1085388 (-) 549 WP_061893452.1 ribosome maturation factor RimM -
  EWA64_RS05885 rpsP 1085403..1085651 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  EWA64_RS05890 ffh 1085908..1087287 (-) 1380 WP_061893451.1 signal recognition particle protein -
  EWA64_RS05895 - 1087500..1088294 (+) 795 WP_061893450.1 inner membrane protein YpjD -
  EWA64_RS05900 - 1088404..1089678 (+) 1275 WP_061893449.1 HlyC/CorC family transporter -
  EWA64_RS05905 luxS 1089769..1090287 (-) 519 WP_039430460.1 S-ribosylhomocysteine lyase Regulator
  EWA64_RS05910 - 1090351..1090995 (-) 645 WP_369435825.1 hypothetical protein -
  EWA64_RS05915 gshA 1090970..1092535 (-) 1566 WP_369435817.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.71 Da        Isoelectric Point: 4.8362

>NTDB_id=344982 EWA64_RS05905 WP_039430460.1 1089769..1090287(-) (luxS) [Vibrio cidicii strain 2423-01]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLYAGFMRKHLNGESVEIIDISP
MGCRTGFYMSLIGAPTEQSVAAAWQASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIASNILAAGISVNKNDDLA
LPAEMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=344982 EWA64_RS05905 WP_039430460.1 1089769..1090287(-) (luxS) [Vibrio cidicii strain 2423-01]
ATGCCGTTATTAGATAGTTTTACCGTCGATCACACGAGAATGCAGGCACCGGCCGTGCGTGTTGCCAAAACCATGCAAAC
GCCAAAAGGTGACACCATTACCGTGTTTGATTTGCGTTTTACTGTGCCAAACCAAGACATTTTGTCGGAAAAAGGGATCC
ACACCTTAGAGCATTTGTATGCAGGCTTTATGCGCAAGCACCTTAATGGAGAGAGTGTAGAGATCATCGACATTTCGCCA
ATGGGATGTCGCACTGGTTTTTACATGAGCCTGATTGGTGCGCCGACAGAGCAGAGCGTTGCTGCTGCGTGGCAAGCATC
GATGGAAGATGTGCTGAAAGTGGAAAGTCAGAACAAGATCCCAGAGCTGAACGAGTACCAATGTGGTACGGCGGCGATGC
ACTCGCTGGAAGAGGCAAAACAGATCGCCAGCAACATTCTCGCCGCGGGTATCTCAGTCAATAAAAACGACGACTTAGCA
TTGCCAGCAGAGATGCTCAAAGAGTTGAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment