Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EWA64_RS03870 Genome accession   NZ_CP035921
Coordinates   631707..633125 (-) Length   472 a.a.
NCBI ID   WP_039429913.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 626707..638125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS03835 moaE 627353..627814 (-) 462 WP_061893515.1 molybdopterin synthase catalytic subunit MoaE -
  EWA64_RS03840 moaD 627817..628062 (-) 246 WP_061893516.1 molybdopterin synthase sulfur carrier subunit -
  EWA64_RS03845 moaC 628059..628538 (-) 480 WP_061893517.1 cyclic pyranopterin monophosphate synthase MoaC -
  EWA64_RS03850 moaB 628549..629061 (-) 513 WP_039429902.1 molybdenum cofactor biosynthesis protein B -
  EWA64_RS03855 moaA 629135..630124 (-) 990 WP_061893532.1 GTP 3',8-cyclase MoaA -
  EWA64_RS03860 - 630427..631320 (+) 894 WP_061893518.1 YvcK family protein -
  EWA64_RS03865 luxU 631376..631723 (-) 348 WP_061893519.1 quorum-sensing phosphorelay protein LuxU -
  EWA64_RS03870 luxO 631707..633125 (-) 1419 WP_039429913.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EWA64_RS03875 uvrB 633387..635417 (-) 2031 WP_061893520.1 excinuclease ABC subunit UvrB -
  EWA64_RS03885 - 636259..637932 (-) 1674 WP_061893533.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52857.40 Da        Isoelectric Point: 6.1994

>NTDB_id=344976 EWA64_RS03870 WP_039429913.1 631707..633125(-) (luxO) [Vibrio cidicii strain 2423-01]
MQHTTDAPRSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKASH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNEADSPANQNYQGFIGSSQKMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSPQVLERFNEYEWPGNVRQLQNVLRNIVVLNNGKEITLEMLPPPLNQPLARSE
NRLFKELEPVSVTDIYPLWMTEKMAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQTWNSKEEIRARDGITE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=344976 EWA64_RS03870 WP_039429913.1 631707..633125(-) (luxO) [Vibrio cidicii strain 2423-01]
ATGCAACACACTACTGATGCGCCGCGCTCACGTTATCTTCTCATGGTGGAAGATACTGCGTCTGTTGCGGCTTTATACCG
ATCCTATCTAACGCCATTGGGTATCGACATTAACATTGTCGGTACTGGACGCGATGCGATTGAAAGTCTCAAACACCGAA
TCCCGGATCTGATCCTGCTTGATTTAAGGTTGCCTGACATGACCGGGATGGATGTACTGCACGCAGTGAAAGCCAGTCAT
CCTGATGTGCCGATTATCTTTATGACCGCGCACGGTTCGATTGATACGGCAGTCGAGGCGATGCGGCATGGTTCACAAGA
CTTTTTGATTAAACCTTGTGAAGCAGATCGCTTGCGGGTCACGGTCAATAACGCCATTCGTAAAGCCAGCAAACTGAAAA
ATGAAGCCGACAGTCCGGCGAATCAGAACTATCAGGGTTTCATTGGTAGTAGCCAGAAAATGCAGCAGGTGTATCGCACC
ATCGACTCAGCGGCAAGCAGCAAAGCGAGTATTTTCATTACCGGAGAAAGTGGTACGGGGAAAGAAGTCTGTGCTGAGGC
CATTCACGCTGCAAGTCGTCGCGGCGACAAGCCTTTCATCGCGATTAACTGTGCGGCGATTCCCAAAGATTTGATTGAAA
GTGAGCTATTTGGCCACGTAAAAGGTGCCTTTACCGGCGCGGCGACGGATCGGCAAGGGGCGGCAGAATTAGCCGATGGC
GGTACTTTGTTTCTTGATGAGCTGTGCGAAATGGATTTGGATTTGCAAACCAAGTTGTTGCGCTTTATCCAAACAGGCAC
GTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTCGATGTGCGTTTTGTTTGTGCCACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGTATGTGATCCCACTGCATCTTCCTCCGCTGCGAGAG
CGGGGAGAGGATGTGATAGAAATCGCCTACTCTTTACTGGGTTACATGTCTCATGAAGAGGGCAAAAACTTTGTACGTTT
CTCTCCACAGGTACTTGAGCGATTCAATGAGTACGAATGGCCCGGCAATGTGCGACAGCTCCAAAACGTGCTGCGCAACA
TAGTAGTACTAAACAATGGTAAGGAAATTACCTTGGAGATGTTGCCACCGCCGTTAAACCAACCATTGGCTCGTAGTGAA
AATCGCCTATTCAAAGAGTTAGAGCCGGTTTCTGTAACAGATATCTACCCGTTATGGATGACAGAAAAAATGGCGATTGA
GCAGGCGATCAAAGCGTGTGATGGCAATATTCCACGTGCTGCAGGTTACTTGGACGTTAGTCCATCGACTATCTATCGCA
AACTCCAAACTTGGAACAGTAAAGAAGAGATCAGGGCCCGTGATGGAATTACTGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.534

95.975

0.831

Multiple sequence alignment