Detailed information NTG0344966

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GEV42_RS07710
• Genome accession: NZ_CP045552
• Coordinates: 1650944..1651948 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain YT12746
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1645944..1656948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV42_RS07680 (GEV42_07875)	fghA	1646036..1646887 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
GEV42_RS07685 (GEV42_07880)	ispF	1646958..1647431 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GEV42_RS07690 (GEV42_07885)	truD	1647428..1648495 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
GEV42_RS07695 (GEV42_07890)	surE	1648483..1649232 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GEV42_RS07700 (GEV42_07895)	-	1649265..1649900 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GEV42_RS07705 (GEV42_07900)	-	1649946..1650839 (+)	894	WP_034040673.1	peptidoglycan DD-metalloendopeptidase family protein	-
GEV42_RS07710 (GEV42_07905)	rpoS	1650944..1651948 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GEV42_RS07715 (GEV42_07910)	fdxA	1652375..1652698 (-)	324	WP_003092272.1	ferredoxin FdxA	-
GEV42_RS07720 (GEV42_07915)	mutS	1652765..1655332 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
GEV42_RS07725 (GEV42_07925)	-	1655458..1656465 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=344966 GEV42_RS07710 WP_003113871.1 1650944..1651948(+) (rpoS) [Pseudomonas aeruginosa strain YT12746]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=344966 GEV42_RS07710 WP_003113871.1 1650944..1651948(+) (rpoS) [Pseudomonas aeruginosa strain YT12746]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653