Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GEV42_RS02560 Genome accession   NZ_CP045552
Coordinates   557875..558600 (-) Length   241 a.a.
NCBI ID   WP_023092333.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YT12746     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552875..563600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV42_RS02535 (GEV42_02615) - 553347..553862 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  GEV42_RS02540 (GEV42_02620) rarD 554552..555448 (-) 897 WP_003103301.1 EamA family transporter RarD -
  GEV42_RS02545 (GEV42_02625) - 555651..556625 (-) 975 WP_034039830.1 serine/threonine protein kinase -
  GEV42_RS02550 (GEV42_02630) - 556687..557445 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  GEV42_RS02555 (GEV42_02635) - 557513..557833 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  GEV42_RS02560 (GEV42_02640) comF 557875..558600 (-) 726 WP_023092333.1 ComF family protein Machinery gene
  GEV42_RS02565 (GEV42_02645) - 558739..559032 (-) 294 WP_003084806.1 hypothetical protein -
  GEV42_RS02570 (GEV42_02650) - 559086..560012 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  GEV42_RS02575 (GEV42_02655) - 560130..560888 (+) 759 WP_034039828.1 5-oxoprolinase subunit PxpA -
  GEV42_RS02580 (GEV42_02660) - 560965..561213 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  GEV42_RS02585 (GEV42_02665) - 561224..562600 (+) 1377 WP_034039826.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  GEV42_RS02590 (GEV42_02670) - 562602..563480 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27061.58 Da        Isoelectric Point: 10.6153

>NTDB_id=344957 GEV42_RS02560 WP_023092333.1 557875..558600(-) (comF) [Pseudomonas aeruginosa strain YT12746]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
YSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=344957 GEV42_RS02560 WP_023092333.1 557875..558600(-) (comF) [Pseudomonas aeruginosa strain YT12746]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
TACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361